Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC1.67□□□□□ -2.14
COL7A1Q02388 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL7A1Q02388 AL139276.1-201ENST00000311910 1001 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC002524.1-201ENST00000411687 547 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC1.67□□□□□ -2.14
COL7A1Q02388 RPL21P41-201ENST00000459863 264 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 AC119751.1-201ENST00000513357 765 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC1.67□□□□□ -2.14
COL7A1Q02388 PDCL2P2-201ENST00000533651 189 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 NDUFA5P6-201ENST00000542110 379 ntBASIC1.67□□□□□ -2.14
COL7A1Q02388 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
COL7A1Q02388 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 MTND5P28-201ENST00000438005 1594 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 SNORA41-201ENST00000384675 132 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 CR769767.1-201ENST00000436337 346 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC103975.1-201ENST00000482506 483 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 APOOP1-201ENST00000604695 592 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 YWHAEP7-203ENST00000622054 312 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 AC106730.3-201ENST00000624568 641 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 AC002543.1-201ENST00000299783 1954 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL7A1Q02388 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL7A1Q02388 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
COL7A1Q02388 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
COL7A1Q02388 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC1.66□□□□□ -2.14
COL7A1Q02388 Y_RNA.178-201ENST00000363832 102 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC013410.1-201ENST00000436223 1232 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 AC093392.2-201ENST00000450682 337 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AC008083.2-201ENST00000546707 476 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC1.66□□□□□ -2.14
COL7A1Q02388 OR4T1P-201ENST00000554933 911 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC1.66□□□□□ -2.14
COL7A1Q02388 AL022099.1-201ENST00000604551 712 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 CR589904.2-201ENST00000612533 440 ntBASIC1.66□□□□□ -2.14
COL7A1Q02388 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL7A1Q02388 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC1.65□□□□□ -2.14
COL7A1Q02388 AL512646.1-201ENST00000269395 1077 ntBASIC1.65□□□□□ -2.14
COL7A1Q02388 RNU6-582P-201ENST00000362989 107 ntBASIC1.65□□□□□ -2.14
COL7A1Q02388 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC1.65□□□□□ -2.14
COL7A1Q02388 AL450263.2-201ENST00000439400 589 ntBASIC1.65□□□□□ -2.14
COL7A1Q02388 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC1.65□□□□□ -2.14
COL7A1Q02388 RN7SKP234-201ENST00000517173 224 ntBASIC1.65□□□□□ -2.14
COL7A1Q02388 RNA5SP380-201ENST00000517190 98 ntBASIC1.65□□□□□ -2.14
COL7A1Q02388 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.65□□□□□ -2.15
COL7A1Q02388 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.65□□□□□ -2.15
COL7A1Q02388 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 RNA5SP325-201ENST00000363756 130 ntBASIC1.65□□□□□ -2.15
COL7A1Q02388 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 AL158825.1-201ENST00000414735 521 ntBASIC1.65□□□□□ -2.15
COL7A1Q02388 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.65□□□□□ -2.15
COL7A1Q02388 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC1.65□□□□□ -2.15
COL7A1Q02388 RPL23AP45-201ENST00000476406 468 ntBASIC1.65□□□□□ -2.15
COL7A1Q02388 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC1.65□□□□□ -2.15
COL7A1Q02388 REXO2-218ENST00000544827 880 ntTSL 3 BASIC1.65□□□□□ -2.15
COL7A1Q02388 RPL23AP84-201ENST00000571193 464 ntBASIC1.65□□□□□ -2.15
COL7A1Q02388 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC1.65□□□□□ -2.15
COL7A1Q02388 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.65□□□□□ -2.15
COL7A1Q02388 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.65□□□□□ -2.15
COL7A1Q02388 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
COL7A1Q02388 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
COL7A1Q02388 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC1.64□□□□□ -2.15
COL7A1Q02388 RN7SKP44-201ENST00000363602 316 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 MDM4-202ENST00000367180 547 ntTSL 3 BASIC1.64□□□□□ -2.15
COL7A1Q02388 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 PTP4A1P7-201ENST00000423476 514 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC007395.1-201ENST00000451333 677 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC107871.2-201ENST00000612894 502 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AL589994.2-201ENST00000621124 579 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC025125.1-201ENST00000624743 1922 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 RNY1P14-201ENST00000384426 108 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 SNORA40.18-201ENST00000391200 128 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 HMGB3P23-201ENST00000414981 585 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 BTF3P4-201ENST00000418852 495 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC011037.1-201ENST00000483964 558 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC107398.1-201ENST00000486904 505 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC068781.1-201ENST00000488231 618 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms