Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC084824.5-201ENST00000612009 413 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL110115.1-201ENST00000614396 364 ntBASIC3.06□□□□□ -1.92
RFX3P48380 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.06□□□□□ -1.92
RFX3P48380 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL356321.1-201ENST00000621360 228 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
RFX3P48380 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
RFX3P48380 AC004972.1-201ENST00000623934 2209 ntBASIC3.05□□□□□ -1.92
RFX3P48380 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.05□□□□□ -1.92
RFX3P48380 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 AC111188.2-201ENST00000529697 1387 ntBASIC3.05□□□□□ -1.92
RFX3P48380 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
RFX3P48380 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 RNU1-70P-201ENST00000362618 164 ntBASIC3.05□□□□□ -1.92
RFX3P48380 OR6K3-202ENST00000368146 996 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RNU6-354P-201ENST00000383862 107 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RNU6-610P-201ENST00000384264 107 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AL591034.1-201ENST00000407447 340 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AC063979.1-201ENST00000415539 377 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.05□□□□□ -1.92
RFX3P48380 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.05□□□□□ -1.92
RFX3P48380 UBE2D3P2-201ENST00000424409 445 ntBASIC3.05□□□□□ -1.92
RFX3P48380 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 HMGB3P11-201ENST00000440127 604 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.05□□□□□ -1.92
RFX3P48380 AC004022.1-201ENST00000447766 1066 ntBASIC3.05□□□□□ -1.92
RFX3P48380 OR51B8P-201ENST00000449892 769 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RNU7-140P-201ENST00000459546 60 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RPS4XP10-201ENST00000465034 731 ntBASIC3.05□□□□□ -1.92
RFX3P48380 HMGB1P25-201ENST00000468402 607 ntBASIC3.05□□□□□ -1.92
RFX3P48380 PABPC1P3-201ENST00000469174 459 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RPL7P49-201ENST00000471402 708 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AC093663.1-201ENST00000497190 394 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AC108078.3-201ENST00000502633 489 ntBASIC3.05□□□□□ -1.92
RFX3P48380 MTND4LP22-201ENST00000508209 276 ntBASIC3.05□□□□□ -1.92
RFX3P48380 RNU6-334P-201ENST00000517072 102 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.05□□□□□ -1.92
RFX3P48380 CCNG2P1-201ENST00000549521 1000 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.05□□□□□ -1.92
RFX3P48380 TRAV37-201ENST00000553906 342 ntBASIC3.05□□□□□ -1.92
RFX3P48380 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.05□□□□□ -1.92
RFX3P48380 AL355812.1-201ENST00000603215 216 ntBASIC3.05□□□□□ -1.92
RFX3P48380 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.05□□□□□ -1.92
RFX3P48380 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.05□□□□□ -1.92
RFX3P48380 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.05□□□□□ -1.92
RFX3P48380 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.05□□□□□ -1.92
RFX3P48380 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.05□□□□□ -1.92
RFX3P48380 SRP72P2-201ENST00000344851 1979 ntBASIC3.05□□□□□ -1.92
RFX3P48380 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.05□□□□□ -1.92
RFX3P48380 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
RFX3P48380 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
RFX3P48380 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.04□□□□□ -1.92
RFX3P48380 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
RFX3P48380 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 OR1L1-202ENST00000373686 1083 ntBASIC3.04□□□□□ -1.92
RFX3P48380 RNU6-549P-201ENST00000384433 107 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC109780.2-201ENST00000413467 845 ntBASIC3.04□□□□□ -1.92
RFX3P48380 RPL23AP83-201ENST00000434984 473 ntBASIC3.04□□□□□ -1.92
RFX3P48380 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 AC008155.2-201ENST00000464337 397 ntBASIC3.04□□□□□ -1.92
RFX3P48380 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.04□□□□□ -1.92
RFX3P48380 RPL32P34-201ENST00000486380 400 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.04□□□□□ -1.92
RFX3P48380 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
RFX3P48380 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC3.04□□□□□ -1.92
RFX3P48380 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.04□□□□□ -1.92
RFX3P48380 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.04□□□□□ -1.92
RFX3P48380 OR4R2P-201ENST00000530815 597 ntBASIC3.04□□□□□ -1.92
RFX3P48380 UBE2NP1-201ENST00000545592 458 ntBASIC3.04□□□□□ -1.92
RFX3P48380 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.04□□□□□ -1.92
RFX3P48380 AC126177.3-201ENST00000551839 688 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.04□□□□□ -1.92
RFX3P48380 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.04□□□□□ -1.92
RFX3P48380 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.04□□□□□ -1.92
RFX3P48380 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 ELOCP35-201ENST00000604289 336 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AP005229.2-201ENST00000609980 697 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC006329.2-201ENST00000611491 394 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC018755.4-201ENST00000619715 454 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC092650.2-201ENST00000619984 902 ntBASIC3.04□□□□□ -1.92
RFX3P48380 SNORD39.4-201ENST00000620099 78 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 AL590396.4-201ENST00000636779 956 ntBASIC3.04□□□□□ -1.92
RFX3P48380 U6.105-201ENST00000637379 88 ntBASIC3.04□□□□□ -1.92
RFX3P48380 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.04□□□□□ -1.92
RFX3P48380 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
RFX3P48380 AL136164.4-201ENST00000625013 2135 ntBASIC3.04□□□□□ -1.92
RFX3P48380 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
RFX3P48380 Z83843.1-201ENST00000604070 3685 ntBASIC3.04□□□□□ -1.92
RFX3P48380 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.03□□□□□ -1.92
RFX3P48380 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms