Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 Z99496.1-201ENST00000469424 1477 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
COL18A1P39060 RNU6-984P-201ENST00000363236 109 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC3.1□□□□□ -1.91
COL18A1P39060 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 RPS6P12-201ENST00000432491 726 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.1□□□□□ -1.91
COL18A1P39060 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.1□□□□□ -1.91
COL18A1P39060 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
COL18A1P39060 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.1□□□□□ -1.91
COL18A1P39060 AC084373.1-201ENST00000603311 235 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 AC110741.2-201ENST00000605278 268 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.1□□□□□ -1.91
COL18A1P39060 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
COL18A1P39060 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL18A1P39060 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.1□□□□□ -1.91
COL18A1P39060 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
COL18A1P39060 SNORA64-201ENST00000384674 134 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 SNORA41-201ENST00000384675 132 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 GSTA9P-201ENST00000406231 611 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 MIR1183-201ENST00000408856 89 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 VN1R48P-201ENST00000448149 1036 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 RPL31P20-201ENST00000449593 360 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 AC025181.1-201ENST00000477507 416 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 LARP7P4-201ENST00000481075 878 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 RPL9P33-201ENST00000484311 566 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 AC108860.1-201ENST00000484521 383 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.1□□□□□ -1.91
COL18A1P39060 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC3.1□□□□□ -1.91
COL18A1P39060 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.1□□□□□ -1.91
COL18A1P39060 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.1□□□□□ -1.91
COL18A1P39060 AC026464.5-201ENST00000562497 722 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 AC022884.3-201ENST00000579571 248 ntBASIC3.1□□□□□ -1.91
COL18A1P39060 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.09□□□□□ -1.91
COL18A1P39060 RNU6-225P-201ENST00000384613 103 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 MT-TP-201ENST00000387461 68 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL18A1P39060 RNA5SP129-201ENST00000410276 118 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 RNU6-603P-201ENST00000411403 107 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 BTG3P1-201ENST00000435859 716 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 ELOCP10-201ENST00000440624 327 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 BUD31P2-201ENST00000449374 300 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 CALM1P2-201ENST00000452941 448 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 OR7L1P-201ENST00000456181 380 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 AL024509.2-201ENST00000493462 493 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 AC107222.1-201ENST00000510899 637 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 RNA5SP76-201ENST00000516277 87 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.09□□□□□ -1.91
COL18A1P39060 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.09□□□□□ -1.91
COL18A1P39060 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.09□□□□□ -1.91
COL18A1P39060 FAM60CP-201ENST00000591086 664 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 BMS1P7-201ENST00000602440 1052 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 ELOCP34-201ENST00000604436 327 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 MIR6766-201ENST00000622641 72 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 AC145207.9-201ENST00000623802 325 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 AC092159.4-201ENST00000624944 550 ntBASIC3.09□□□□□ -1.91
COL18A1P39060 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.08□□□□□ -1.92
COL18A1P39060 ADAM3A-203ENST00000461344 2157 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 CUL1P1-201ENST00000509510 2425 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RAD1P1-201ENST00000231383 813 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RNU6-1251P-201ENST00000364502 107 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 SNORD65-201ENST00000391079 73 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.08□□□□□ -1.92
COL18A1P39060 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.08□□□□□ -1.92
COL18A1P39060 IFNWP4-201ENST00000453148 294 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RPL21P71-201ENST00000465598 459 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 AC104090.1-201ENST00000506341 1171 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RN7SKP31-201ENST00000516354 278 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.08□□□□□ -1.92
COL18A1P39060 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC3.08□□□□□ -1.92
COL18A1P39060 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.08□□□□□ -1.92
COL18A1P39060 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.08□□□□□ -1.92
COL18A1P39060 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.08□□□□□ -1.92
COL18A1P39060 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.08□□□□□ -1.92
COL18A1P39060 AC067747.1-201ENST00000608026 250 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 AC078899.5-201ENST00000612475 178 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 AC004825.2-201ENST00000616634 455 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RMST_5.1-201ENST00000618704 126 ntBASIC3.08□□□□□ -1.92
COL18A1P39060 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.08□□□□□ -1.92
COL18A1P39060 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.08□□□□□ -1.92
COL18A1P39060 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.08□□□□□ -1.92
COL18A1P39060 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL18A1P39060 RNA5SP502-201ENST00000362694 119 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 RN7SKP44-201ENST00000363602 316 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
COL18A1P39060 AL034374.1-201ENST00000406329 351 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 RN7SKP32-201ENST00000410167 303 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 CACYBPP1-201ENST00000438592 684 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 AL162388.1-201ENST00000450912 352 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.07□□□□□ -1.92
COL18A1P39060 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.07□□□□□ -1.92
COL18A1P39060 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.07□□□□□ -1.92
COL18A1P39060 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms