Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 AC022069.1-201ENST00000582910 658 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 SUMO2P14-201ENST00000604488 293 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AC024595.1-201ENST00000623088 387 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AC004943.3-201ENST00000624116 600 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
BRCA1P38398 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 ISCA1P6-201ENST00000427740 390 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 ARL5AP2-201ENST00000444698 533 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.23□□□□□ -1.89
BRCA1P38398 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 CIR1P1-201ENST00000524055 1133 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.23□□□□□ -1.89
BRCA1P38398 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.23□□□□□ -1.89
BRCA1P38398 NTAN1P1-201ENST00000603150 646 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC3.23□□□□□ -1.89
BRCA1P38398 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.23□□□□□ -1.89
BRCA1P38398 AC092608.2-201ENST00000624427 218 ntBASIC3.23□□□□□ -1.89
BRCA1P38398 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
BRCA1P38398 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.23□□□□□ -1.89
BRCA1P38398 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.23□□□□□ -1.89
BRCA1P38398 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.22□□□□□ -1.89
BRCA1P38398 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 SNORD114-30-201ENST00000364448 72 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 SNORA27.3-201ENST00000364937 134 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 CYCSP45-201ENST00000402289 315 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 RNA5SP239-201ENST00000410218 129 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.22□□□□□ -1.89
BRCA1P38398 MTND4P24-201ENST00000424002 397 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AL353705.4-201ENST00000449661 238 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AP000926.1-201ENST00000479573 241 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.22□□□□□ -1.89
BRCA1P38398 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 AC090751.1-201ENST00000566966 267 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 MIR4458-201ENST00000578872 75 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 VN1R79P-201ENST00000593540 513 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC103810.6-201ENST00000606708 136 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 AC067852.7-201ENST00000623270 535 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC3.22□□□□□ -1.89
BRCA1P38398 AC095050.2-201ENST00000510748 1458 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC092593.1-201ENST00000515413 1815 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
BRCA1P38398 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 RNU6-98P-201ENST00000384173 107 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 DNAJC19P6-201ENST00000401853 280 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC244453.4-201ENST00000419150 388 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC006960.1-201ENST00000419980 153 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 AC133134.1-201ENST00000466800 359 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 CYCSP20-201ENST00000473154 315 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 RN7SL442P-201ENST00000473804 320 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 RPL21P99-201ENST00000480369 423 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AC107398.1-201ENST00000486904 505 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 RN7SKP43-201ENST00000516173 320 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 IGKV2D-23-201ENST00000518179 286 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.22□□□□□ -1.89
BRCA1P38398 CENPUP2-201ENST00000555897 1186 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 AL118508.4-201ENST00000624142 1176 ntBASIC3.22□□□□□ -1.89
BRCA1P38398 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.22□□□□□ -1.89
BRCA1P38398 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BRCA1P38398 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
BRCA1P38398 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.21□□□□□ -1.89
BRCA1P38398 RNU1-75P-201ENST00000347264 129 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
BRCA1P38398 SNORD114-1-201ENST00000362705 72 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 SNORA62.2-201ENST00000364672 152 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
BRCA1P38398 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
BRCA1P38398 RNU6-40P-201ENST00000384254 107 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AL079342.1-201ENST00000401460 267 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AC092745.2-202ENST00000411880 369 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 NANOGP5-201ENST00000424456 877 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AL138785.1-201ENST00000425821 331 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.21□□□□□ -1.9
BRCA1P38398 HMGN1P5-201ENST00000448591 263 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC3.21□□□□□ -1.9
BRCA1P38398 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.21□□□□□ -1.9
BRCA1P38398 RN7SL636P-201ENST00000497504 294 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.21□□□□□ -1.9
BRCA1P38398 AC073111.2-201ENST00000605657 1075 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
BRCA1P38398 AC004825.2-201ENST00000616634 455 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AC025016.1-201ENST00000616746 682 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 AC121761.2-201ENST00000617300 689 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.21□□□□□ -1.9
BRCA1P38398 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
BRCA1P38398 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms