Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXC11O43248 RNU6-1073P-201ENST00000517182 106 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC11O43248 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC11O43248 CR383656.7-201ENST00000548164 174 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC11O43248 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC11O43248 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXC11O43248 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXC11O43248 AC008751.2-201ENST00000597885 980 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 AC012669.1-201ENST00000603209 283 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC11O43248 AC024560.3-201ENST00000608482 349 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 AC012531.5-201ENST00000611375 151 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC11O43248 AL392048.1-201ENST00000613946 534 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC11O43248 AL031667.3-201ENST00000620124 655 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC11O43248 OR5BE1P-202ENST00000641168 1176 ntBASIC4.19□□□□□ -1.74
HOXC11O43248 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXC11O43248 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.19□□□□□ -1.74
HOXC11O43248 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXC11O43248 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC11O43248 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC11O43248 MIR554-201ENST00000384874 96 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 RNU2-47P-201ENST00000410649 186 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 RNU2-37P-201ENST00000410695 177 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 CYCSP19-201ENST00000411715 316 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 TOMM22P1-201ENST00000418578 312 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 RPL21P66-201ENST00000426566 466 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AL691449.1-201ENST00000426570 421 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 PRELID3BP10-201ENST00000431957 584 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC11O43248 UBE2FP3-201ENST00000436366 524 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 MTCYBP39-201ENST00000437562 491 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 RPS4XP4-201ENST00000443195 763 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 AL353691.1-201ENST00000451332 387 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 RAD23BP3-201ENST00000454157 1152 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 MTCO3P16-201ENST00000454456 754 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 Z82190.1-201ENST00000454534 490 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 RPL31P13-201ENST00000484151 370 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC146944.2-203ENST00000502493 354 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 AC093809.1-201ENST00000509155 340 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 HSPE1P23-201ENST00000509838 286 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC11O43248 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 AC139495.1-202ENST00000513164 354 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 MRPS33P3-201ENST00000513456 322 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 SNORA70.14-201ENST00000516205 110 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC008802.1-201ENST00000519121 791 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXC11O43248 OR5D17P-201ENST00000531492 978 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXC11O43248 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 OR7K1P-201ENST00000546439 926 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXC11O43248 MRPS36P5-201ENST00000551909 298 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXC11O43248 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 VN1R90P-201ENST00000595717 726 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXC11O43248 AL590282.1-201ENST00000610379 1136 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 VIS1.1-201ENST00000610517 203 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 MIR6868-201ENST00000611215 58 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 MIR7702-201ENST00000621931 59 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AC008785.1-201ENST00000624475 456 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 AP005264.7-201ENST00000625003 745 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
HOXC11O43248 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 ZNF736P9Y-201ENST00000439586 1345 ntBASIC4.18□□□□□ -1.74
HOXC11O43248 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXC11O43248 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 AL161912.2-201ENST00000565707 3007 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 RNU1-15P-201ENST00000353977 144 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 RNU6-600P-201ENST00000362524 99 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 Y_RNA.302-201ENST00000364997 102 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 SNORD6-201ENST00000365444 73 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXC11O43248 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXC11O43248 TEX41-202ENST00000414256 604 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXC11O43248 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXC11O43248 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXC11O43248 MTND1P20-201ENST00000430341 950 ntBASIC4.17□□□□□ -1.74
HOXC11O43248 RPL23AP89-201ENST00000439324 255 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms