Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 Y_RNA.359-201ENST00000365498 102 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 RNA5SP283-201ENST00000365604 119 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 MIR135A2-201ENST00000384854 100 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 MIR659-201ENST00000384963 97 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 HMGN1P24-201ENST00000412282 298 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 MTND1P21-201ENST00000412991 285 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 TOMM22P1-201ENST00000418578 312 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 BX890604.2-201ENST00000427883 474 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LARP1BP2-201ENST00000486594 519 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 RPL36AP41-201ENST00000493820 306 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AP003467.2-201ENST00000520175 319 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC109635.4-202ENST00000531666 412 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC093249.4-201ENST00000564755 259 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC012213.3-201ENST00000577199 777 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC138932.5-201ENST00000617759 563 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC009509.4-201ENST00000619202 509 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 GHR-213ENST00000622294 4312 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 AC095050.2-201ENST00000510748 1458 ntBASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC9Q9Y3X0 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC6.21□□□□□ -1.41
CCDC9Q9Y3X0 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC6.21□□□□□ -1.41
CCDC9Q9Y3X0 PNPT1P2-201ENST00000456768 2050 ntBASIC6.21□□□□□ -1.41
CCDC9Q9Y3X0 AP001350.1-201ENST00000601906 1524 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC021146.4-201ENST00000309229 279 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 MIR372-201ENST00000362225 67 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RNA5SP366-201ENST00000365454 123 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 SNORA75-201ENST00000384158 137 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-516P-201ENST00000411381 104 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC092162.1-201ENST00000432828 434 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RPL23AP93-201ENST00000440847 484 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL049734.2-201ENST00000441066 616 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 NPM1P49-201ENST00000448027 714 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RPS17P2-201ENST00000461663 408 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC055855.1-201ENST00000489563 579 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 IGKV1OR2-1-201ENST00000514060 354 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-709P-201ENST00000517257 104 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC022882.1-201ENST00000532142 501 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC105129.1-201ENST00000560250 297 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL356432.3-201ENST00000568952 465 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AP001429.1-201ENST00000602568 530 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-87P-201ENST00000607561 108 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC104073.3-201ENST00000610942 955 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AP001506.1-201ENST00000615444 211 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AC012150.2-201ENST00000621300 544 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL159972.1-201ENST00000625150 448 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 AL031595.2-201ENST00000624215 19071 ntBASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC9Q9Y3X0 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 MTND4P26-201ENST00000415971 1359 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 SMG1P4-204ENST00000523028 4131 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 SNORD46.1-201ENST00000364139 104 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RNA5SP189-201ENST00000364920 115 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-637P-201ENST00000384050 107 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 SNORD116-4-201ENST00000384733 96 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 PTMAP2-201ENST00000397627 327 ntBASIC6.2□□□□□ -1.42
CCDC9Q9Y3X0 DEFB108C-201ENST00000400154 252 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms