Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC008638.3-201ENST00000603341 463 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC097468.3-201ENST00000607956 456 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 MIR3653-201ENST00000625572 110 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC140479.6-201ENST00000633535 357 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RNA5SP366-201ENST00000365454 123 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 Y_RNA.436-201ENST00000384097 102 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 Y_RNA.493-201ENST00000384422 102 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL355379.1-201ENST00000405542 640 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RN7SKP235-201ENST00000410662 305 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RNA5SP39-201ENST00000411245 120 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC004552.1-201ENST00000419089 348 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 VN1R108P-201ENST00000431580 830 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 OR4C10P-201ENST00000434991 931 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 THAP5P1-201ENST00000439089 262 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RPL23AP89-201ENST00000439324 255 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 SDCBPP1-201ENST00000440192 890 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC079804.1-201ENST00000461922 436 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RPS26P3-201ENST00000470205 348 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC090543.2-201ENST00000483963 348 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC004057.1-201ENST00000485827 348 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC104164.2-201ENST00000496953 495 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC008958.1-201ENST00000511047 682 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC060788.1-201ENST00000521318 469 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AP003385.6-201ENST00000531603 374 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC024909.2-201ENST00000553035 286 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 PRELID3BP8-201ENST00000604148 295 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC112230.1-201ENST00000604342 547 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC128687.1-201ENST00000605304 619 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL591034.3-201ENST00000605511 685 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL390208.1-201ENST00000605885 644 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RN7SKP299-201ENST00000606679 301 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AC007546.1-201ENST00000619452 559 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 NMD3P1-201ENST00000439704 1488 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 Z82217.1-201ENST00000625157 8149 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 AL390237.1-201ENST00000404226 1415 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 LARP1BP1-201ENST00000506036 1359 ntBASIC5.04□□□□□ -1.6
CHMP4CQ96CF2 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 MIR1305-201ENST00000408300 86 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 RN7SKP142-201ENST00000411236 328 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 MTCYBP24-201ENST00000420387 1106 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC010153.1-201ENST00000432862 727 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 TAF9P1-201ENST00000445421 515 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 EPS15P1-201ENST00000448836 336 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 TAF9P2-201ENST00000454958 515 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 SNRPGP9-201ENST00000456025 225 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 RPL7P19-201ENST00000469948 618 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC108145.1-201ENST00000503770 153 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC022447.3-201ENST00000506865 495 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 MTND4P2-201ENST00000507767 1203 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 PTGES3P3-201ENST00000511479 482 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC034159.1-201ENST00000513885 583 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 RPL12P22-201ENST00000519073 490 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC007115.1-201ENST00000546853 234 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC073544.2-201ENST00000601155 540 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 ZYXP1-201ENST00000617638 118 ntBASIC5.03□□□□□ -1.6
CHMP4CQ96CF2 AC008785.1-201ENST00000624475 456 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms