Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-298P-201ENST00000390888 96 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 TANK-206ENST00000406287 875 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AL031121.1-201ENST00000406553 254 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 RPL5P18-201ENST00000406671 891 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 RN7SKP159-201ENST00000410657 292 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 BOLA3P4-201ENST00000418151 400 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 HSPE1P1-201ENST00000421494 318 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 SETP8-201ENST00000435341 628 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 CST9LP2-201ENST00000437612 320 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 HMGB3P11-201ENST00000440127 604 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC092641.1-201ENST00000440229 772 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 NUTF2P7-201ENST00000453086 375 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 MTATP6P14-201ENST00000455189 673 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC068657.1-201ENST00000520807 306 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC104027.1-201ENST00000521887 300 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC087894.1-201ENST00000538359 518 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 MIR3160-1-201ENST00000577972 85 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AL354976.1-201ENST00000613843 387 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 AL049777.1-201ENST00000622740 518 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 PABPC1P7-201ENST00000413177 1513 ntBASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC54Q8NEL0 ZNF37BP-203ENST00000452306 1352 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 MIR148B-201ENST00000362252 99 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AL359837.1-201ENST00000381357 287 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RNU6-657P-201ENST00000383904 107 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RNU6-730P-201ENST00000383954 104 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 Y_RNA.408-201ENST00000383987 102 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RNA5SP129-201ENST00000410276 118 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RPL32P35-201ENST00000415214 394 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 KRR1P1-201ENST00000419430 803 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 FNDC3CP-201ENST00000420795 1155 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 MTND2P39-201ENST00000457230 764 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 snoU13.3-201ENST00000459441 104 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC091564.1-201ENST00000464563 479 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC084024.2-201ENST00000503480 791 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RN7SKP13-201ENST00000515933 244 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RNA5SP217-201ENST00000515959 91 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 RN7SKP21-201ENST00000516503 220 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 SNORA70.18-201ENST00000516696 98 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AP001207.2-201ENST00000519490 539 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC019227.1-201ENST00000526902 510 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC109635.4-202ENST00000531666 412 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 TMF1P1-201ENST00000576058 373 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC022069.1-201ENST00000582910 658 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 MAGOH2P-202ENST00000584384 429 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 VN1R85P-201ENST00000601587 426 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC067959.1-201ENST00000604334 379 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC024060.1-201ENST00000607052 494 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC093673.2-201ENST00000609674 331 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 MIR6748-201ENST00000610433 71 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AL136295.6-201ENST00000610486 658 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 uc_338.1-201ENST00000612113 180 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AL158163.2-201ENST00000619110 700 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC084824.4-201ENST00000620106 731 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC104985.3-201ENST00000623479 597 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 AC004808.1-201ENST00000627671 721 ntBASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC54Q8NEL0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms