Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC012443.1-201ENST00000605605 231 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AC231759.1-201ENST00000616455 597 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AL354798.1-201ENST00000622505 329 ntBASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.87
ZNF540Q8NDQ6 AL512283.1-201ENST00000606756 1384 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 SNORA3.3-201ENST00000408712 125 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 RNU2-28P-201ENST00000410457 189 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 HMGB3P20-201ENST00000417997 600 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AL035246.1-201ENST00000433554 1255 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 NDUFB1P1-201ENST00000435191 180 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AP000949.1-201ENST00000438328 629 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 TRIM60P18-201ENST00000441518 828 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC099563.1-201ENST00000456086 418 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC091153.1-201ENST00000466297 402 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AP002884.2-201ENST00000471647 395 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 RPS4XP22-201ENST00000480755 780 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC013828.1-201ENST00000481845 158 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 FCF1P3-201ENST00000496394 590 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC008628.1-201ENST00000508663 265 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 PHBP14-201ENST00000512887 367 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC239860.2-201ENST00000525886 270 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 OR7E13P-201ENST00000526052 910 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 YPEL5P3-201ENST00000547227 352 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC055876.1-202ENST00000567053 138 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC090079.2-201ENST00000575289 768 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC245036.5-201ENST00000596330 847 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC078880.5-201ENST00000617845 421 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AL356585.4-201ENST00000623078 1229 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 OR8B1P-202ENST00000641132 1178 ntBASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
ZNF540Q8NDQ6 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AP002907.1-201ENST00000606361 1430 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC011460.1-201ENST00000636268 1834 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-492P-201ENST00000363035 104 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-799P-201ENST00000363567 107 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 SKINT1L-201ENST00000401057 817 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-55P-201ENST00000411092 107 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-575P-201ENST00000411326 105 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RNU6-954P-201ENST00000411355 107 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 BOLA3P4-201ENST00000418151 400 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 KRR1P1-201ENST00000419430 803 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RPS15AP6-201ENST00000420703 385 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC018644.1-201ENST00000429934 551 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 KCTD9P5-201ENST00000504141 1170 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC027309.2-201ENST00000520566 192 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 FAM60DP-201ENST00000524174 632 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC011602.1-201ENST00000546484 331 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AL121766.1-201ENST00000547436 487 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 OR4H12P-201ENST00000556269 907 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 RN7SL703P-201ENST00000578485 302 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AL035411.2-201ENST00000604022 421 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC092954.1-201ENST00000609121 445 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 AC073530.2-201ENST00000623987 261 ntBASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
ZNF540Q8NDQ6 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms