Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPS4XP10-201ENST00000465034 731 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RPS23P3-201ENST00000470993 430 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC093801.2-201ENST00000503966 1050 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MLLT10P2-201ENST00000506434 249 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC021146.1-201ENST00000511202 716 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RNU6-467P-201ENST00000517027 110 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC104417.1-201ENST00000523974 751 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL139174.1-201ENST00000531489 886 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC023161.2-201ENST00000551218 780 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 EEF1B2P4-201ENST00000551398 348 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 MIR5186-201ENST00000577504 120 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL583856.2-201ENST00000606298 543 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL390240.1-201ENST00000612950 384 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL360181.4-201ENST00000621752 134 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC109454.4-201ENST00000623411 649 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AC095031.1-201ENST00000623685 672 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 AL049780.3-201ENST00000624612 1583 ntBASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HDDC3Q8N4P3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 U3.26-201ENST00000391236 204 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 U3.29-201ENST00000391296 212 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 HMGN2P8-201ENST00000391458 268 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AL035405.1-201ENST00000400795 710 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 DBIP2-201ENST00000419076 262 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 RPF2P1-201ENST00000424137 906 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 HMGN2P20-201ENST00000437531 273 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 RABEPKP1-201ENST00000440529 1026 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 DNAJC19P1-201ENST00000455312 319 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AP000563.1-201ENST00000490865 758 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC004069.2-201ENST00000505438 1114 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC006390.1-201ENST00000508068 283 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC008837.1-201ENST00000511513 412 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 RNU6-27P-201ENST00000516146 107 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC092747.2-201ENST00000545069 983 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC090502.2-201ENST00000549267 280 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC122134.1-202ENST00000569111 1201 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 VIS1.1-201ENST00000610517 203 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AL732618.1-201ENST00000623251 301 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 CYP3A51P-201ENST00000633513 256 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AC087821.2-201ENST00000637086 450 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 AL021368.2-201ENST00000606125 5352 ntBASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HDDC3Q8N4P3 HSPA8P1-201ENST00000425843 1833 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RPL7P26-201ENST00000333817 754 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 MIR423-201ENST00000362201 94 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RNU6-657P-201ENST00000383904 107 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC016769.3-201ENST00000396562 315 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL591034.1-201ENST00000407447 340 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 YPEL5P1-201ENST00000419731 367 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 RAC1P8-201ENST00000427086 527 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC012497.1-201ENST00000429392 575 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 ARF4P2-201ENST00000430209 526 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 NDUFB1P1-201ENST00000435191 180 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 MTCYBP31-201ENST00000438855 1122 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 ARF4P4-201ENST00000439608 520 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 COX6CP18-201ENST00000448769 222 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AL049873.1-201ENST00000480540 376 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 SETP14-201ENST00000497538 873 ntBASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.6□□□□□ -1.83
HDDC3Q8N4P3 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms