Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC093155.1-201ENST00000440164 826 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 RPL23AP16-201ENST00000441715 421 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC239367.2-201ENST00000447309 705 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 EXOSC3P1-201ENST00000448649 500 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 TRBV26-201ENST00000456572 344 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 U3.44-201ENST00000458938 192 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC023598.1-201ENST00000472521 361 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL136126.1-201ENST00000473603 402 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC114967.1-201ENST00000504890 259 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 RN7SKP13-201ENST00000515933 244 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 IGKV2D-36-201ENST00000518643 226 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 ZNF705CP-201ENST00000530515 889 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 OR6C73P-201ENST00000546432 358 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 LSM6P2-201ENST00000552208 177 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 MTCYBP23-201ENST00000558717 1102 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL513477.2-201ENST00000607858 568 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC092954.1-201ENST00000609121 445 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL354976.1-201ENST00000613843 387 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 U73479.1-201ENST00000618062 168 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC034229.5-201ENST00000624258 185 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 OR1S1-201ENST00000624470 978 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 AC026634.1-201ENST00000634369 198 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
SKA3Q8IX90 AL672296.1-201ENST00000427780 2158 ntBASIC3.09□□□□□ -1.91
SKA3Q8IX90 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
SKA3Q8IX90 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SKA3Q8IX90 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
SKA3Q8IX90 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
SKA3Q8IX90 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.09□□□□□ -1.92
SKA3Q8IX90 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
SKA3Q8IX90 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.92
SKA3Q8IX90 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
SKA3Q8IX90 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC010733.2-201ENST00000589496 5702 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 SNORA31-201ENST00000362607 130 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RNU6-492P-201ENST00000363035 104 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 snoZ40.1-201ENST00000364540 72 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RNA5SP189-201ENST00000364920 115 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 DYNLT3P1-201ENST00000378574 347 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 Y_RNA.493-201ENST00000384422 102 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AP000567.1-201ENST00000406413 156 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RNA5SP31-201ENST00000411144 127 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC126124.2-201ENST00000413542 321 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC245291.1-201ENST00000419501 328 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 MTND2P16-201ENST00000419987 799 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 GTF2IP23-201ENST00000423746 351 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 CYCSP4-201ENST00000429682 331 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RPL31P54-201ENST00000429803 370 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 SEPT7P5-201ENST00000434048 306 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 GTF2IP7-202ENST00000436677 309 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 FTH1P1-201ENST00000437933 532 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC009969.1-201ENST00000438726 172 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 HMGB3P6-201ENST00000444896 598 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 MTCO1P48-201ENST00000448024 1096 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AL031313.1-201ENST00000448435 256 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 MTCO3P2-201ENST00000457365 171 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 SNORA84-201ENST00000459229 133 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RN7SL594P-201ENST00000470590 287 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 NCOR1P1-202ENST00000486162 291 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC084024.2-201ENST00000503480 791 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 UBE2V1P12-201ENST00000503954 474 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC026403.1-201ENST00000518938 295 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 RPL12P22-201ENST00000519073 490 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AP006245.1-201ENST00000522549 120 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 OR10V3P-201ENST00000525712 725 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AP001189.2-201ENST00000527320 189 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC026333.2-201ENST00000542164 106 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC004024.1-201ENST00000549244 247 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC008127.2-201ENST00000549925 1075 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 DUXAP6-201ENST00000553858 601 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 OR4T1P-201ENST00000554933 911 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 BNIP3P38-201ENST00000601117 544 ntBASIC3.08□□□□□ -1.92
SKA3Q8IX90 AC113368.1-201ENST00000603736 382 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms