Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
CCDC88AQ3V6T2 RNU4-7P-201ENST00000364758 141 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AC093084.1-201ENST00000424233 687 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AL590399.6-201ENST00000446396 307 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 CFTRP1-201ENST00000456646 183 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 MIR1273D-201ENST00000577266 86 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 NRBF2P1-201ENST00000587407 859 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AC103810.6-201ENST00000606708 136 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AC009318.3-201ENST00000616916 503 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AL162233.1-201ENST00000620014 944 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AC092608.2-201ENST00000624427 218 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 AC110792.3-201ENST00000595906 1614 ntBASIC3.09□□□□□ -1.91
CCDC88AQ3V6T2 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 MTCO1P14-201ENST00000441695 1559 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 MIR518C-201ENST00000384822 101 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 Y_RNA.595-201ENST00000410403 105 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC007390.1-201ENST00000415722 356 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 RPS20P5-201ENST00000434808 360 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 RPL9P32-201ENST00000464118 620 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AP001317.1-201ENST00000531194 960 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC034236.3-201ENST00000605999 461 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC069234.5-201ENST00000611056 416 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AL133370.2-201ENST00000619934 439 ntBASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.09□□□□□ -1.92
CCDC88AQ3V6T2 AC087565.3-202ENST00000642085 1603 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC004925.1-201ENST00000624256 2706 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 XPOTP1-201ENST00000443317 2398 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 Y_RNA.62-201ENST00000362840 99 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 SNORA51.4-201ENST00000364993 124 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 RN7SKP123-201ENST00000410732 291 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 RPL31P45-201ENST00000419532 356 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 MTND2P2-201ENST00000434633 945 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 HIGD1AP2-201ENST00000446367 280 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 RPL23AP11-201ENST00000475260 469 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC126182.1-201ENST00000478134 357 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AP003102.1-201ENST00000525638 661 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 ELOCP31-201ENST00000540463 467 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC009063.1-201ENST00000563342 702 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC016727.1-205ENST00000605437 569 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 AC123768.4-201ENST00000616244 701 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC88AQ3V6T2 RPL21P132-201ENST00000331267 462 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 Y_RNA.140-201ENST00000363474 103 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 RNA5SP99-201ENST00000364020 114 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 RNU1-100P-201ENST00000365255 165 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC080125.1-201ENST00000414888 684 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 UBE2V2P4-201ENST00000447495 259 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 RPL9P6-201ENST00000492764 598 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 SNORD116-26-201ENST00000516006 96 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AL133271.1-201ENST00000538229 291 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC009318.2-201ENST00000610917 651 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC091564.4-201ENST00000533934 2194 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC002543.1-201ENST00000299783 1954 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 SDCBPP3-201ENST00000419629 891 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 MTCO3P21-201ENST00000430791 643 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 HMGN2P23-201ENST00000456759 269 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 RPL30P9-201ENST00000465586 330 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 RANP3-201ENST00000530970 276 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 OR4H12P-201ENST00000556269 907 ntBASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CCDC88AQ3V6T2 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms