Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 AP001180.3-201ENST00000582221 145 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 BNIP3P24-201ENST00000593398 557 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 OR6R2P-201ENST00000609216 300 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AC004825.2-201ENST00000616634 455 ntBASIC4.09□□□□□ -1.75
USP41Q3LFD5 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USP41Q3LFD5 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USP41Q3LFD5 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.09□□□□□ -1.76
USP41Q3LFD5 MTND5P24-201ENST00000438892 1767 ntBASIC4.09□□□□□ -1.76
USP41Q3LFD5 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.09□□□□□ -1.76
USP41Q3LFD5 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
USP41Q3LFD5 LINC00561-201ENST00000565815 2738 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP41Q3LFD5 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USP41Q3LFD5 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP41Q3LFD5 SNORD3H-201ENST00000384486 214 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 RNU6-253P-201ENST00000384730 105 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC007066.1-201ENST00000392902 381 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC016769.3-201ENST00000396562 315 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 EIF5P1-201ENST00000400019 1231 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 Z98941.1-201ENST00000407764 100 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 USP9YP26-201ENST00000421008 661 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC093698.1-201ENST00000423843 571 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL365396.1-201ENST00000430854 671 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 MTCYBP3-201ENST00000445588 1137 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 MTND2P19-201ENST00000449129 1012 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 RPL26P28-201ENST00000451325 435 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 TRGVB-201ENST00000453257 471 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 RPL7P49-201ENST00000471402 708 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 S100A11P1-201ENST00000477525 312 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 BET1P1-201ENST00000482276 359 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 HSPE1P23-201ENST00000509838 286 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 RN7SKP234-201ENST00000517173 224 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 OR4A45P-201ENST00000529954 901 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 GNRHR2P1-201ENST00000555315 631 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL133457.1-201ENST00000564251 987 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 LARP7P2-201ENST00000575306 125 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 ISCA1P3-201ENST00000577104 373 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 BDP1P-201ENST00000582658 1990 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL109653.1-201ENST00000603091 248 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 BNIP3P11-201ENST00000603878 563 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC025588.3-201ENST00000604182 274 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL009028.1-201ENST00000604895 802 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL159169.3-201ENST00000608871 561 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC084757.4-201ENST00000616350 526 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 MIR4496-201ENST00000635896 61 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP41Q3LFD5 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.08□□□□□ -1.76
USP41Q3LFD5 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USP41Q3LFD5 AL133412.1-201ENST00000380194 2992 ntBASIC4.08□□□□□ -1.76
USP41Q3LFD5 AC130650.2-201ENST00000618736 2403 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 HSPA8P1-201ENST00000425843 1833 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 MIR423-201ENST00000362201 94 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 RNA5SP387-201ENST00000364226 106 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 SNORD116-8-201ENST00000384365 95 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 ARF4P3-201ENST00000397387 509 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL035410.1-201ENST00000427409 427 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 ATP5HP2-201ENST00000433885 485 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL606662.1-201ENST00000445763 553 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms