Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 AC022432.1-201ENST00000595739 310 ntBASIC5.49□□□□□ -1.53
LIG3P49916 IMMP1LP3-201ENST00000604197 224 ntBASIC5.49□□□□□ -1.53
LIG3P49916 AC090948.1-201ENST00000607464 549 ntBASIC5.49□□□□□ -1.53
LIG3P49916 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.49□□□□□ -1.53
LIG3P49916 MIR6837-201ENST00000620884 64 ntBASIC5.49□□□□□ -1.53
LIG3P49916 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC5.49□□□□□ -1.53
LIG3P49916 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LIG3P49916 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LIG3P49916 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 ZNF734P-201ENST00000419494 1534 ntBASIC5.48□□□□□ -1.53
LIG3P49916 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
LIG3P49916 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 AC067945.1-201ENST00000342609 618 ntBASIC5.48□□□□□ -1.53
LIG3P49916 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 RNU6-641P-201ENST00000384006 107 ntBASIC5.48□□□□□ -1.53
LIG3P49916 RNU6-146P-201ENST00000384602 108 ntBASIC5.48□□□□□ -1.53
LIG3P49916 SNORA48.4-201ENST00000391089 134 ntBASIC5.48□□□□□ -1.53
LIG3P49916 RNA5SP296-201ENST00000410523 111 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 AL645937.1-202ENST00000421799 937 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AL355433.1-201ENST00000422804 300 ntBASIC5.48□□□□□ -1.53
LIG3P49916 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 AC018644.1-201ENST00000429934 551 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AL353597.2-202ENST00000434901 373 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 RN7SL188P-201ENST00000469842 285 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC5.48□□□□□ -1.53
LIG3P49916 AC126389.1-201ENST00000477436 290 ntBASIC5.48□□□□□ -1.53
LIG3P49916 UBA52P7-201ENST00000486088 380 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AC068305.1-201ENST00000497406 726 ntBASIC5.48□□□□□ -1.53
LIG3P49916 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.48□□□□□ -1.53
LIG3P49916 HMGB3P16-201ENST00000508037 287 ntBASIC5.48□□□□□ -1.53
LIG3P49916 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 HMGN1P9-201ENST00000515212 298 ntBASIC5.48□□□□□ -1.53
LIG3P49916 RNU4-49P-201ENST00000516080 140 ntBASIC5.48□□□□□ -1.53
LIG3P49916 RNU6-941P-201ENST00000516346 108 ntBASIC5.48□□□□□ -1.53
LIG3P49916 SUMO2P20-201ENST00000520803 283 ntBASIC5.48□□□□□ -1.53
LIG3P49916 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 AC128657.1-201ENST00000549459 145 ntBASIC5.48□□□□□ -1.53
LIG3P49916 SCOCP1-201ENST00000554676 349 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 AL451044.1-201ENST00000604867 238 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AL031666.3-201ENST00000609320 1006 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 AC068831.8-201ENST00000620171 435 ntBASIC5.48□□□□□ -1.53
LIG3P49916 AP000843.1-201ENST00000624880 701 ntBASIC5.48□□□□□ -1.53
LIG3P49916 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.48□□□□□ -1.53
LIG3P49916 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
LIG3P49916 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.48□□□□□ -1.53
LIG3P49916 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC5.48□□□□□ -1.53
LIG3P49916 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
LIG3P49916 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
LIG3P49916 AC004972.1-201ENST00000623934 2209 ntBASIC5.47□□□□□ -1.53
LIG3P49916 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 Y_RNA.100-201ENST00000363141 102 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RNA5SP335-201ENST00000363817 110 ntBASIC5.47□□□□□ -1.53
LIG3P49916 Y_RNA.184-201ENST00000363884 108 ntBASIC5.47□□□□□ -1.53
LIG3P49916 Y_RNA.326-201ENST00000365176 113 ntBASIC5.47□□□□□ -1.53
LIG3P49916 Y_RNA.384-201ENST00000383909 102 ntBASIC5.47□□□□□ -1.53
LIG3P49916 MIR514A2-201ENST00000385131 88 ntBASIC5.47□□□□□ -1.53
LIG3P49916 MIR514A3-201ENST00000385132 88 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RNU4-26P-201ENST00000410270 107 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RAB28P1-201ENST00000411517 641 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 RPL36AP10-201ENST00000421785 322 ntBASIC5.47□□□□□ -1.53
LIG3P49916 BX510359.3-201ENST00000422168 306 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RPL7L1P9-201ENST00000431298 745 ntBASIC5.47□□□□□ -1.53
LIG3P49916 MTATP6P16-201ENST00000434543 526 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.47□□□□□ -1.53
LIG3P49916 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 AC006480.1-201ENST00000449887 378 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AZGP1P2-201ENST00000454506 345 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.47□□□□□ -1.53
LIG3P49916 RPS29P15-201ENST00000458329 171 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC007537.2-201ENST00000472093 511 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC116562.3-201ENST00000506136 177 ntBASIC5.47□□□□□ -1.53
LIG3P49916 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.47□□□□□ -1.53
LIG3P49916 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC5.47□□□□□ -1.53
LIG3P49916 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.47□□□□□ -1.53
LIG3P49916 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LIG3P49916 RNU6-27P-201ENST00000516146 107 ntBASIC5.47□□□□□ -1.53
LIG3P49916 RN7SKP219-201ENST00000516825 296 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms