Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
RFX3P48380 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.08□□□□□ -1.92
RFX3P48380 AL845331.3-202ENST00000562856 261 ntBASIC3.08□□□□□ -1.92
RFX3P48380 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.08□□□□□ -1.92
RFX3P48380 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.08□□□□□ -1.92
RFX3P48380 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.08□□□□□ -1.92
RFX3P48380 AL109653.1-201ENST00000603091 248 ntBASIC3.08□□□□□ -1.92
RFX3P48380 AC098483.2-201ENST00000603158 454 ntBASIC3.08□□□□□ -1.92
RFX3P48380 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.08□□□□□ -1.92
RFX3P48380 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 AC118273.1-201ENST00000525324 3006 ntBASIC3.08□□□□□ -1.92
RFX3P48380 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
RFX3P48380 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
RFX3P48380 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
RFX3P48380 U3.11-201ENST00000364476 212 ntBASIC3.07□□□□□ -1.92
RFX3P48380 RNU6-619P-201ENST00000365146 108 ntBASIC3.07□□□□□ -1.92
RFX3P48380 SNORA70.4-201ENST00000365509 134 ntBASIC3.07□□□□□ -1.92
RFX3P48380 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
RFX3P48380 MIR34B-201ENST00000385076 84 ntBASIC3.07□□□□□ -1.92
RFX3P48380 MIR16-1-201ENST00000385271 89 ntBASIC3.07□□□□□ -1.92
RFX3P48380 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.07□□□□□ -1.92
RFX3P48380 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.07□□□□□ -1.92
RFX3P48380 DEFB130D-201ENST00000426866 237 ntBASIC3.07□□□□□ -1.92
RFX3P48380 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 AL512637.2-201ENST00000431287 1256 ntBASIC3.07□□□□□ -1.92
RFX3P48380 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 GXYLT1P1-201ENST00000446657 490 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.07□□□□□ -1.92
RFX3P48380 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.07□□□□□ -1.92
RFX3P48380 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.07□□□□□ -1.92
RFX3P48380 AC109471.1-201ENST00000511631 612 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AC119751.1-201ENST00000513357 765 ntBASIC3.07□□□□□ -1.92
RFX3P48380 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.07□□□□□ -1.92
RFX3P48380 RNA5SP380-201ENST00000517190 98 ntBASIC3.07□□□□□ -1.92
RFX3P48380 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.07□□□□□ -1.92
RFX3P48380 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
RFX3P48380 AC005476.1-201ENST00000554427 397 ntBASIC3.07□□□□□ -1.92
RFX3P48380 OR4T1P-201ENST00000554933 911 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.07□□□□□ -1.92
RFX3P48380 NCAPGP2-201ENST00000557911 754 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.07□□□□□ -1.92
RFX3P48380 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.07□□□□□ -1.92
RFX3P48380 AC092474.3-201ENST00000603022 568 ntBASIC3.07□□□□□ -1.92
RFX3P48380 DPRXP5-201ENST00000604662 539 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AC016877.3-201ENST00000606778 504 ntBASIC3.07□□□□□ -1.92
RFX3P48380 uc_338.1-201ENST00000612113 180 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AL390240.1-201ENST00000612950 384 ntBASIC3.07□□□□□ -1.92
RFX3P48380 AC073476.4-201ENST00000628409 72 ntBASIC3.07□□□□□ -1.92
RFX3P48380 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
RFX3P48380 SGO1P1-201ENST00000603525 1447 ntBASIC3.07□□□□□ -1.92
RFX3P48380 CR383658.2-201ENST00000547576 1525 ntBASIC3.07□□□□□ -1.92
RFX3P48380 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.07□□□□□ -1.92
RFX3P48380 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
RFX3P48380 RNU6-50P-201ENST00000362356 103 ntBASIC3.06□□□□□ -1.92
RFX3P48380 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.06□□□□□ -1.92
RFX3P48380 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.06□□□□□ -1.92
RFX3P48380 SNORA11.1-201ENST00000408133 129 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 RPL31P54-201ENST00000429803 370 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 HMGN2P20-201ENST00000437531 273 ntBASIC3.06□□□□□ -1.92
RFX3P48380 CST9LP2-201ENST00000437612 320 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 AL050341.1-201ENST00000447743 313 ntBASIC3.06□□□□□ -1.92
RFX3P48380 CCNB1IP1P3-201ENST00000454702 829 ntBASIC3.06□□□□□ -1.92
RFX3P48380 snoU13.4-201ENST00000458916 104 ntBASIC3.06□□□□□ -1.92
RFX3P48380 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 AC021678.1-201ENST00000505195 936 ntBASIC3.06□□□□□ -1.92
RFX3P48380 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.06□□□□□ -1.92
RFX3P48380 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.06□□□□□ -1.92
RFX3P48380 AC010265.1-201ENST00000513509 211 ntBASIC3.06□□□□□ -1.92
RFX3P48380 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 RNU1-61P-201ENST00000516107 151 ntBASIC3.06□□□□□ -1.92
RFX3P48380 RNA5SP468-201ENST00000516782 93 ntBASIC3.06□□□□□ -1.92
RFX3P48380 RNU6-467P-201ENST00000517027 110 ntBASIC3.06□□□□□ -1.92
RFX3P48380 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.06□□□□□ -1.92
RFX3P48380 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.06□□□□□ -1.92
RFX3P48380 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.06□□□□□ -1.92
RFX3P48380 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
RFX3P48380 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 MTCO1P40-201ENST00000574371 625 ntBASIC3.06□□□□□ -1.92
RFX3P48380 MIR4474-201ENST00000579189 78 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 AC005776.1-201ENST00000603164 290 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AC128687.1-201ENST00000605304 619 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.06□□□□□ -1.92
RFX3P48380 AC069200.1-201ENST00000609511 323 ntBASIC3.06□□□□□ -1.92
RFX3P48380 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms