Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 RAC1P2-201ENST00000511164 579 ntBASIC3.48□□□□□ -1.85
SOX3P41225 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 RNA5SP208-201ENST00000516156 78 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC007991.1-201ENST00000522680 631 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 ELOCP32-201ENST00000548625 324 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 AC005412.1-201ENST00000580812 1049 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.48□□□□□ -1.85
SOX3P41225 AC115621.1-201ENST00000604653 858 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 AC112220.3-201ENST00000605502 502 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC006270.3-201ENST00000605967 1036 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 AC245297.2-201ENST00000610119 565 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AL360219.1-201ENST00000610230 366 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC105429.2-201ENST00000610567 517 ntBASIC3.48□□□□□ -1.85
SOX3P41225 U7.8-201ENST00000619968 63 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC012442.3-202ENST00000636742 206 ntBASIC3.48□□□□□ -1.85
SOX3P41225 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.48□□□□□ -1.85
SOX3P41225 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.48□□□□□ -1.85
SOX3P41225 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SOX3P41225 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
SOX3P41225 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.48□□□□□ -1.85
SOX3P41225 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
SOX3P41225 AC090229.1-201ENST00000590983 1609 ntBASIC3.48□□□□□ -1.85
SOX3P41225 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.47□□□□□ -1.85
SOX3P41225 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 SNORD3H-201ENST00000384486 214 ntBASIC3.47□□□□□ -1.85
SOX3P41225 SNORA70E-201ENST00000384492 135 ntBASIC3.47□□□□□ -1.85
SOX3P41225 RNY3P9-201ENST00000384727 106 ntBASIC3.47□□□□□ -1.85
SOX3P41225 SNRPEP2-201ENST00000397592 279 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AL356131.1-201ENST00000405826 414 ntBASIC3.47□□□□□ -1.85
SOX3P41225 RAB9AP3-201ENST00000412737 573 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 AL354941.1-201ENST00000438600 464 ntBASIC3.47□□□□□ -1.85
SOX3P41225 SNORA71B-202ENST00000439232 272 ntBASIC3.47□□□□□ -1.85
SOX3P41225 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX3P41225 RPS29P31-201ENST00000446147 164 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 RPL39P6-201ENST00000448289 150 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 RAB9AP1-201ENST00000449393 573 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX3P41225 RPL26P28-201ENST00000451325 435 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AL645939.1-201ENST00000453429 797 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC098824.1-201ENST00000453565 980 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AL136126.1-201ENST00000473603 402 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC084198.1-201ENST00000477747 402 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AP000926.1-201ENST00000479573 241 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AP002812.1-201ENST00000495378 474 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC092045.1-201ENST00000495716 1231 ntBASIC3.47□□□□□ -1.85
SOX3P41225 UBE2CP3-201ENST00000502715 450 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.47□□□□□ -1.85
SOX3P41225 AC147055.4-201ENST00000504399 745 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC010486.2-201ENST00000505572 483 ntBASIC3.47□□□□□ -1.85
SOX3P41225 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.47□□□□□ -1.85
SOX3P41225 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.47□□□□□ -1.85
SOX3P41225 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 MIR4429-201ENST00000580105 73 ntBASIC3.47□□□□□ -1.85
SOX3P41225 MIR5187-201ENST00000583479 76 ntBASIC3.47□□□□□ -1.85
SOX3P41225 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.47□□□□□ -1.85
SOX3P41225 AL049634.3-201ENST00000604968 457 ntBASIC3.47□□□□□ -1.85
SOX3P41225 SNORA62.6-201ENST00000606322 83 ntBASIC3.47□□□□□ -1.85
SOX3P41225 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 AC079684.1-201ENST00000621405 437 ntBASIC3.47□□□□□ -1.85
SOX3P41225 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.47□□□□□ -1.85
SOX3P41225 ZNF285B-201ENST00000561698 1767 ntBASIC3.47□□□□□ -1.85
SOX3P41225 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
SOX3P41225 AP000526.1-201ENST00000603308 1388 ntBASIC3.47□□□□□ -1.85
SOX3P41225 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.47□□□□□ -1.85
SOX3P41225 OR5BR1P-201ENST00000524992 1330 ntBASIC3.46□□□□□ -1.85
SOX3P41225 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.46□□□□□ -1.85
SOX3P41225 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SOX3P41225 MTND5P24-201ENST00000438892 1767 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms