Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC009487.2-201ENST00000420969 6821 ntBASIC3.83□□□□□ -1.8
CUX1P39880 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CUX1P39880 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CUX1P39880 AC093908.1-201ENST00000623125 8092 ntBASIC3.83□□□□□ -1.8
CUX1P39880 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.83□□□□□ -1.8
CUX1P39880 ZNF542P-204ENST00000482727 1305 ntBASIC3.83□□□□□ -1.8
CUX1P39880 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.83□□□□□ -1.8
CUX1P39880 AL512646.1-201ENST00000269395 1077 ntBASIC3.83□□□□□ -1.8
CUX1P39880 RPS15AP28-201ENST00000435088 386 ntBASIC3.83□□□□□ -1.8
CUX1P39880 RNU7-170P-201ENST00000459303 61 ntBASIC3.83□□□□□ -1.8
CUX1P39880 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.83□□□□□ -1.8
CUX1P39880 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.83□□□□□ -1.8
CUX1P39880 BX664608.1-201ENST00000610519 487 ntBASIC3.83□□□□□ -1.8
CUX1P39880 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CUX1P39880 AL445437.1-201ENST00000623157 3087 ntBASIC3.83□□□□□ -1.8
CUX1P39880 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CUX1P39880 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CUX1P39880 AL161781.1-201ENST00000354277 403 ntBASIC3.82□□□□□ -1.8
CUX1P39880 RNU1-91P-201ENST00000364746 163 ntBASIC3.82□□□□□ -1.8
CUX1P39880 SNORD21-201ENST00000383953 95 ntBASIC3.82□□□□□ -1.8
CUX1P39880 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CUX1P39880 MIR1287-201ENST00000408492 90 ntBASIC3.82□□□□□ -1.8
CUX1P39880 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CUX1P39880 RFPL1S-203ENST00000539579 330 ntBASIC3.82□□□□□ -1.8
CUX1P39880 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.82□□□□□ -1.8
CUX1P39880 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.82□□□□□ -1.8
CUX1P39880 AL137072.1-201ENST00000603444 466 ntBASIC3.82□□□□□ -1.8
CUX1P39880 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CUX1P39880 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
CUX1P39880 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.81□□□□□ -1.8
CUX1P39880 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CUX1P39880 Y_RNA.338-201ENST00000365320 114 ntBASIC3.81□□□□□ -1.8
CUX1P39880 SNORA68.2-201ENST00000391263 128 ntBASIC3.81□□□□□ -1.8
CUX1P39880 SNORD88.1-201ENST00000408684 91 ntBASIC3.81□□□□□ -1.8
CUX1P39880 RPL36AP21-201ENST00000490372 323 ntBASIC3.81□□□□□ -1.8
CUX1P39880 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CUX1P39880 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.81□□□□□ -1.8
CUX1P39880 AC009501.3-201ENST00000605001 1352 ntBASIC3.81□□□□□ -1.8
CUX1P39880 Y_RNA.466-201ENST00000384294 113 ntBASIC3.8□□□□□ -1.8
CUX1P39880 Y_RNA.508-201ENST00000384502 114 ntBASIC3.8□□□□□ -1.8
CUX1P39880 UBE2V2P4-201ENST00000447495 259 ntBASIC3.8□□□□□ -1.8
CUX1P39880 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.8□□□□□ -1.8
CUX1P39880 POU5F1P7-201ENST00000508759 541 ntBASIC3.8□□□□□ -1.8
CUX1P39880 RN7SKP282-201ENST00000516824 299 ntBASIC3.8□□□□□ -1.8
CUX1P39880 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.8□□□□□ -1.8
CUX1P39880 VN1R9P-201ENST00000614184 867 ntBASIC3.8□□□□□ -1.8
CUX1P39880 AP001005.3-201ENST00000622049 129 ntBASIC3.8□□□□□ -1.8
CUX1P39880 AL160394.1-201ENST00000624765 724 ntBASIC3.8□□□□□ -1.8
CUX1P39880 MTND5P27-201ENST00000428871 1720 ntBASIC3.8□□□□□ -1.8
CUX1P39880 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.8□□□□□ -1.8
CUX1P39880 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CUX1P39880 AL356292.1-201ENST00000283110 373 ntBASIC3.8□□□□□ -1.8
CUX1P39880 MIR221-201ENST00000385135 110 ntBASIC3.8□□□□□ -1.8
CUX1P39880 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CUX1P39880 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CUX1P39880 NPM1P49-201ENST00000448027 714 ntBASIC3.8□□□□□ -1.8
CUX1P39880 RPL7P52-201ENST00000449200 742 ntBASIC3.8□□□□□ -1.8
CUX1P39880 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.8□□□□□ -1.8
CUX1P39880 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CUX1P39880 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CUX1P39880 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.8□□□□□ -1.8
CUX1P39880 AC006116.7-201ENST00000590141 756 ntBASIC3.8□□□□□ -1.8
CUX1P39880 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.8□□□□□ -1.8
CUX1P39880 PHKBP1-201ENST00000450951 1951 ntBASIC3.79□□□□□ -1.8
CUX1P39880 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.79□□□□□ -1.8
CUX1P39880 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.79□□□□□ -1.8
CUX1P39880 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CUX1P39880 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CUX1P39880 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.79□□□□□ -1.8
CUX1P39880 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC3.79□□□□□ -1.8
CUX1P39880 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.79□□□□□ -1.8
CUX1P39880 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.79□□□□□ -1.8
CUX1P39880 AC116337.1-201ENST00000509680 687 ntBASIC3.79□□□□□ -1.8
CUX1P39880 RN7SKP219-201ENST00000516825 296 ntBASIC3.79□□□□□ -1.8
CUX1P39880 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.79□□□□□ -1.8
CUX1P39880 AP001004.1-201ENST00000582468 324 ntBASIC3.79□□□□□ -1.8
CUX1P39880 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC3.79□□□□□ -1.8
CUX1P39880 AC103710.1-201ENST00000610003 901 ntBASIC3.79□□□□□ -1.8
CUX1P39880 AC104237.2-201ENST00000612456 443 ntBASIC3.79□□□□□ -1.8
CUX1P39880 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CUX1P39880 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.79□□□□□ -1.8
CUX1P39880 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.78□□□□□ -1.8
CUX1P39880 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CUX1P39880 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CUX1P39880 Y_RNA.796-201ENST00000364268 102 ntBASIC3.78□□□□□ -1.8
CUX1P39880 Y_RNA.799-201ENST00000364992 102 ntBASIC3.78□□□□□ -1.8
CUX1P39880 SNORA80E-201ENST00000384744 137 ntBASIC3.78□□□□□ -1.8
CUX1P39880 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CUX1P39880 AC009969.1-201ENST00000438726 172 ntBASIC3.78□□□□□ -1.8
CUX1P39880 RN7SL499P-201ENST00000481141 276 ntBASIC3.78□□□□□ -1.8
CUX1P39880 XKRY-201ENST00000510392 1100 ntBASIC3.78□□□□□ -1.8
CUX1P39880 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.78□□□□□ -1.8
CUX1P39880 AL389895.1-201ENST00000554127 252 ntBASIC3.78□□□□□ -1.8
CUX1P39880 AGGF1P8-201ENST00000562979 1000 ntBASIC3.78□□□□□ -1.8
CUX1P39880 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CUX1P39880 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CUX1P39880 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CUX1P39880 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CUX1P39880 HMGB1P11-201ENST00000413899 637 ntBASIC3.77□□□□□ -1.81
CUX1P39880 MTATP6P11-201ENST00000428071 670 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms