Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC112220.1-201ENST00000434628 355 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 RPL23AP33-201ENST00000442301 452 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 AC008280.2-201ENST00000455473 307 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC006445.2-201ENST00000510061 472 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 RNU4-60P-201ENST00000517239 135 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AC104997.1-201ENST00000519761 717 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.26□□□□□ -1.89
BRCA1P38398 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
BRCA1P38398 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 DCAF13P1-201ENST00000495256 1330 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 AC016717.2-201ENST00000609089 5141 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 MTCO1P9-201ENST00000505577 1534 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
BRCA1P38398 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
BRCA1P38398 MIR26A1-201ENST00000362205 77 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 RNU1-87P-201ENST00000363727 170 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC234782.4-201ENST00000417646 1048 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 DPH3P2-201ENST00000422618 250 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 RPL30P3-201ENST00000424262 333 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AC093663.2-201ENST00000484625 313 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC3.26□□□□□ -1.89
BRCA1P38398 AC018754.1-201ENST00000607486 925 ntBASIC3.26□□□□□ -1.89
BRCA1P38398 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.26□□□□□ -1.89
BRCA1P38398 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.25□□□□□ -1.89
BRCA1P38398 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
BRCA1P38398 ZNF72P-201ENST00000425869 1908 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 XIAPP3-201ENST00000312918 795 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 U3.11-201ENST00000364476 212 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
BRCA1P38398 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
BRCA1P38398 RNA5SP274-201ENST00000410484 108 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 MTCO3P4-201ENST00000419236 787 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 ELOCP6-201ENST00000429066 328 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 RPL23AP22-201ENST00000437556 453 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 RPL23AP31-201ENST00000456160 467 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 ELOCP12-201ENST00000458706 328 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 SNORD108-201ENST00000459332 71 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.25□□□□□ -1.89
BRCA1P38398 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
BRCA1P38398 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.25□□□□□ -1.89
BRCA1P38398 AC068313.1-201ENST00000604028 1008 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 AC079610.2-201ENST00000604818 690 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 MIR1264-201ENST00000616374 69 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 AC099063.3-201ENST00000642066 185 ntBASIC3.25□□□□□ -1.89
BRCA1P38398 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.25□□□□□ -1.89
BRCA1P38398 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
BRCA1P38398 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.25□□□□□ -1.89
BRCA1P38398 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
BRCA1P38398 SNORD56.3-201ENST00000363507 71 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.24□□□□□ -1.89
BRCA1P38398 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 UQCRHP3-201ENST00000451503 251 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 OR6K1P-201ENST00000456766 971 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 RN7SL633P-201ENST00000488974 297 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 RNA5SP458-201ENST00000516188 119 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 FAM60DP-201ENST00000524174 632 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 AC025260.1-201ENST00000548858 430 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 RNA5SP108-201ENST00000605921 117 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 CR589904.2-201ENST00000612533 440 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC3.24□□□□□ -1.89
BRCA1P38398 AC103798.2-201ENST00000624292 632 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
BRCA1P38398 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 GTF2H2B-203ENST00000508065 1432 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 NSRP1P1-201ENST00000444067 1693 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 RAD1P1-201ENST00000231383 813 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 RNVU1-3-201ENST00000364313 161 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 RNU6-76P-201ENST00000384060 104 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 AL583834.1-201ENST00000406943 343 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 RNU4-53P-201ENST00000410828 140 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AC004987.3-201ENST00000413879 771 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 AC006020.1-201ENST00000420179 1854 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.24□□□□□ -1.89
BRCA1P38398 AC023347.2-201ENST00000433994 462 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.24□□□□□ -1.89
BRCA1P38398 RPL23AP15-201ENST00000450202 459 ntBASIC3.24□□□□□ -1.89
BRCA1P38398 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
BRCA1P38398 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BRCA1P38398 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms