Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA9P31269 AC106734.1-201ENST00000568646 663 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 MIR4672-201ENST00000583126 81 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 AC012254.4-201ENST00000588843 273 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA9P31269 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA9P31269 RPL12P50-201ENST00000603116 116 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 AC098483.2-201ENST00000603158 454 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA9P31269 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA9P31269 AC253576.2-201ENST00000618815 580 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 AC073476.4-201ENST00000628409 72 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXA9P31269 MIR7153-201ENST00000637758 57 ntBASIC3.24□□□□□ -1.89
HOXA9P31269 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA9P31269 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HOXA9P31269 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA9P31269 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 MIR22-201ENST00000362190 85 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AL138880.1-201ENST00000405824 642 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXA9P31269 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA9P31269 RPL21P66-201ENST00000426566 466 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 DPPA2P1-201ENST00000428060 556 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 SSXP4-201ENST00000451349 245 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 RPL21P8-201ENST00000465083 535 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC006483.1-201ENST00000487308 313 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXA9P31269 AC083906.5-201ENST00000503722 328 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 RN7SKP272-201ENST00000516988 232 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 MTCO1P4-201ENST00000520516 1409 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC104027.1-201ENST00000521887 300 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA9P31269 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HOXA9P31269 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA9P31269 AC006023.1-201ENST00000603944 259 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC079610.2-201ENST00000604818 690 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC083865.1-201ENST00000636634 831 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 AC022031.1-201ENST00000585985 2593 ntBASIC3.23□□□□□ -1.89
HOXA9P31269 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA9P31269 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA9P31269 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC007496.3-201ENST00000624987 3443 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC008432.1-201ENST00000615912 1320 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA9P31269 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 METTL21EP-201ENST00000298105 713 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 MIR16-2-201ENST00000362117 81 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 RNU6-335P-201ENST00000364563 113 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 RNU6-805P-201ENST00000365643 106 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 RNU6-481P-201ENST00000384194 107 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 UBE2V1P2-201ENST00000397758 440 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 HMGB3P31-201ENST00000413333 595 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 AL606495.1-201ENST00000422100 813 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 AL512637.2-201ENST00000431287 1256 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 RPL23AP22-201ENST00000437556 453 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 HMGB3P11-201ENST00000440127 604 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 AC021146.5-201ENST00000503544 545 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC121161.1-201ENST00000510606 652 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA9P31269 AP000916.1-201ENST00000533869 835 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 OR4H12P-201ENST00000556269 907 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.22□□□□□ -1.89
HOXA9P31269 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.22□□□□□ -1.89
HOXA9P31269 AL451074.6-201ENST00000608512 729 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 U73479.1-201ENST00000618062 168 ntBASIC3.22□□□□□ -1.89
HOXA9P31269 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA9P31269 SRP72P2-201ENST00000344851 1979 ntBASIC3.21□□□□□ -1.89
HOXA9P31269 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
HOXA9P31269 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
HOXA9P31269 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.21□□□□□ -1.9
HOXA9P31269 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
HOXA9P31269 RNU6-543P-201ENST00000362576 108 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms