Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC2.31□□□□□ -2.04
HMGB3O15347 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.31□□□□□ -2.04
HMGB3O15347 RPL23AP78-201ENST00000599928 470 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 AL355810.1-201ENST00000614629 552 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 MESTIT1_2.1-201ENST00000616328 235 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 CYCSP41-201ENST00000616920 296 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 MIR6076-201ENST00000617521 113 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 AC095031.1-201ENST00000623685 672 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 AC079228.1-201ENST00000624774 1049 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 CR381572.1-201ENST00000625098 102 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 AL034408.1-202ENST00000636088 415 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 ZNF734P-201ENST00000419494 1534 ntBASIC2.31□□□□□ -2.04
HMGB3O15347 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.31□□□□□ -2.04
HMGB3O15347 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.31□□□□□ -2.04
HMGB3O15347 AC090740.1-201ENST00000623193 2262 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HMGB3O15347 RNA5SP50-201ENST00000363731 107 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 RNU6-1180P-201ENST00000364935 107 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 OR6K3-202ENST00000368146 996 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 Y_RNA.493-201ENST00000384422 102 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.3□□□□□ -2.04
HMGB3O15347 RNU2-25P-201ENST00000411041 191 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 RPS20P25-201ENST00000412447 352 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 MTCO3P12-201ENST00000416718 547 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AL807761.1-201ENST00000417622 171 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 NIPA2P1-201ENST00000426223 976 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.3□□□□□ -2.04
HMGB3O15347 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.3□□□□□ -2.04
HMGB3O15347 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
HMGB3O15347 MTCYBP34-201ENST00000439552 670 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.3□□□□□ -2.04
HMGB3O15347 RNA5SP310-201ENST00000459084 116 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 RPL21P10-201ENST00000463521 490 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC091959.2-201ENST00000477363 321 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 PRELID3BP6-201ENST00000503839 571 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HMGB3O15347 MTND4LP31-201ENST00000514859 294 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 OR8I1P-201ENST00000529291 931 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC007458.1-201ENST00000542812 373 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC093014.1-201ENST00000548926 724 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
HMGB3O15347 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC2.3□□□□□ -2.04
HMGB3O15347 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC2.3□□□□□ -2.04
HMGB3O15347 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC2.3□□□□□ -2.04
HMGB3O15347 GLUD1P4-201ENST00000590914 418 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AL360181.4-201ENST00000621752 134 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 AC097372.4-201ENST00000625025 466 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 FRG1DP-201ENST00000635586 771 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.3□□□□□ -2.04
HMGB3O15347 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC2.3□□□□□ -2.04
HMGB3O15347 SGO1P2-201ENST00000429458 1589 ntBASIC2.3□□□□□ -2.04
HMGB3O15347 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
HMGB3O15347 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
HMGB3O15347 AC096644.4-201ENST00000563417 2912 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.29□□□□□ -2.04
HMGB3O15347 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.29□□□□□ -2.04
HMGB3O15347 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
HMGB3O15347 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
HMGB3O15347 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HMGB3O15347 RNA5SP258-201ENST00000362750 119 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 MIR490-201ENST00000384865 128 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AL353692.2-201ENST00000407054 335 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 RNU4-47P-201ENST00000410876 114 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 RNU6-564P-201ENST00000410983 104 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.29□□□□□ -2.04
HMGB3O15347 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.29□□□□□ -2.04
HMGB3O15347 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.29□□□□□ -2.04
HMGB3O15347 RPL36P19-201ENST00000430744 301 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AL035246.1-201ENST00000433554 1255 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 AL162389.1-201ENST00000449233 177 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.29□□□□□ -2.04
HMGB3O15347 AL031183.1-201ENST00000457667 207 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AP000852.1-201ENST00000472460 573 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 RN7SL297P-201ENST00000483161 293 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AC073522.1-201ENST00000483312 377 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AC023424.2-201ENST00000493479 777 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 AC093770.1-201ENST00000511559 571 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 SNORA31.8-201ENST00000516327 108 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 SNORA31.15-201ENST00000516771 132 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 AL133271.1-201ENST00000538229 291 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 HPRT1P3-201ENST00000539521 576 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AL442163.2-201ENST00000553912 710 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 MIR4446-201ENST00000578505 67 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC2.29□□□□□ -2.04
HMGB3O15347 MIMT1-201ENST00000597105 1050 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AC010620.2-201ENST00000600135 313 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.29□□□□□ -2.04
HMGB3O15347 BX664608.1-201ENST00000610519 487 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC2.29□□□□□ -2.04
HMGB3O15347 AL391597.1-201ENST00000618707 694 ntBASIC2.29□□□□□ -2.04
HMGB3O15347 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC2.29□□□□□ -2.04
HMGB3O15347 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms