Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RPS3AP37-201ENST00000419176 745 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC004854.1-201ENST00000440356 349 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RPL21P89-201ENST00000444021 467 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RPS11P1-201ENST00000451072 473 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 NANOGP10-201ENST00000453325 895 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 PTGES3P5-201ENST00000455109 434 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC012181.1-201ENST00000479895 423 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC010265.1-201ENST00000513509 211 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC087369.1-201ENST00000520775 996 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 YPEL5P3-201ENST00000547227 352 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC125611.1-201ENST00000549563 229 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC103881.1-201ENST00000603476 538 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC016877.3-201ENST00000606778 504 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 MIR6875-201ENST00000617506 72 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC022960.3-201ENST00000619794 441 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 AC022509.4-201ENST00000621404 572 ntBASIC3.46□□□□□ -1.86
DDX28Q9NUL7 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
DDX28Q9NUL7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 RNU6-600P-201ENST00000362524 99 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 RNU6-413P-201ENST00000384115 107 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 RN7SKP159-201ENST00000410657 292 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MTCO2P8-201ENST00000412213 658 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AL356095.1-201ENST00000417217 199 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MTCO2P23-201ENST00000425216 680 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 ELOCP13-201ENST00000443934 329 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC007327.1-201ENST00000447461 264 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 RPS17P13-201ENST00000448974 407 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC006539.3-201ENST00000454258 129 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 VN1R17P-201ENST00000472048 1090 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC011979.1-201ENST00000472300 483 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 RPS27AP1-201ENST00000475545 471 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC010460.1-201ENST00000507087 466 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MTCYBP41-201ENST00000528913 1123 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AL139174.1-201ENST00000531489 886 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC012182.1-201ENST00000570133 895 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC053481.4-201ENST00000583164 216 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 BNIP3P26-201ENST00000600827 554 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC006329.2-201ENST00000611491 394 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC120349.2-201ENST00000625002 298 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MTND4P34-201ENST00000572715 1371 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 CDR1-202ENST00000625883 1485 ntBASIC3.45□□□□□ -1.86
DDX28Q9NUL7 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.45□□□□□ -1.86
DDX28Q9NUL7 AC109315.1-201ENST00000584143 1347 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 MTCO1P23-201ENST00000415223 1526 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC106754.1-201ENST00000562632 1513 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RNA5SP258-201ENST00000362750 119 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RNA5SP130-201ENST00000364431 114 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RNU6-629P-201ENST00000384061 103 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RPL21P65-201ENST00000406094 466 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 RNU4-22P-201ENST00000411058 166 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC012065.2-201ENST00000421295 375 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 AC007389.2-201ENST00000434630 306 ntBASIC3.44□□□□□ -1.86
DDX28Q9NUL7 EEF1A1P39-201ENST00000440791 250 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms