Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL5P23-201ENST00000496040 868 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC112198.1-201ENST00000505369 1220 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 TMEM248P1-201ENST00000510579 951 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC010486.3-201ENST00000511602 785 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC099522.1-202ENST00000514718 367 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 OR8L1P-201ENST00000534005 955 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC007224.1-201ENST00000564410 144 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC013444.2-201ENST00000603317 787 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AL596327.1-201ENST00000603629 213 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 Z99497.2-201ENST00000603634 310 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AP000811.1-201ENST00000603803 651 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AC010738.1-201ENST00000604970 987 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 RNA5SP108-201ENST00000605921 117 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 AL031667.3-201ENST00000620124 655 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 CYP3A51P-201ENST00000633513 256 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 AL079343.1-201ENST00000572358 1771 ntBASIC3.43□□□□□ -1.86
NKX3-1Q99801 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
NKX3-1Q99801 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.43□□□□□ -1.86
NKX3-1Q99801 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 LARP1BP1-201ENST00000506036 1359 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNU6-989P-201ENST00000362756 107 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNU6-263P-201ENST00000363811 107 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNA5SP399-201ENST00000364003 117 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNU6-777P-201ENST00000364265 104 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 Y_RNA.560-201ENST00000384689 102 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNU6-253P-201ENST00000384730 105 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AL022722.2-201ENST00000402519 180 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 MIR1251-201ENST00000408552 70 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RPL31P45-201ENST00000419532 356 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 CKS1BP5-201ENST00000434172 273 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 UBE2D3P4-201ENST00000441973 436 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RANP8-201ENST00000444720 713 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 RPS17P13-201ENST00000448974 407 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 NUTF2P7-201ENST00000453086 375 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 FABP3P2-201ENST00000453169 399 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RNA5SP246-201ENST00000458909 119 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 SNORD108-201ENST00000459332 71 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 RPS7P7-201ENST00000463499 571 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC090453.1-201ENST00000495560 436 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 BTF3L4P4-201ENST00000506381 449 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 Y_RNA.688-201ENST00000516565 95 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 MTCO1P49-201ENST00000523429 802 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC012435.1-202ENST00000568772 240 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC099489.2-201ENST00000574976 260 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 MIR6868-201ENST00000611215 58 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AL392048.1-201ENST00000613946 534 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC122133.1-201ENST00000613964 233 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AC025588.4-201ENST00000615802 908 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 AL356596.1-201ENST00000624230 379 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
NKX3-1Q99801 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NKX3-1Q99801 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
NKX3-1Q99801 DCAF13P1-201ENST00000495256 1330 ntBASIC3.42□□□□□ -1.86
NKX3-1Q99801 UBE3AP2-201ENST00000429033 2259 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
NKX3-1Q99801 SPRR2C-201ENST00000290702 219 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 AC007685.1-201ENST00000329806 452 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 RPL21P132-201ENST00000331267 462 ntBASIC3.41□□□□□ -1.86
NKX3-1Q99801 RNVU1-3-201ENST00000364313 161 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms