Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL355812.1-201ENST00000603215 216 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AP001981.2-201ENST00000603241 418 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC067959.1-201ENST00000604334 379 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC084782.3-201ENST00000612282 578 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC092140.2-201ENST00000618027 521 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AL445264.1-201ENST00000621719 171 ntBASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP4CQ96CF2 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MIR448-201ENST00000362131 111 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RNU6-28P-201ENST00000362378 107 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RNA5SP515-201ENST00000364570 118 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 Y_RNA.318-201ENST00000365131 97 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RNU6-339P-201ENST00000384310 107 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MIR1193-201ENST00000408109 78 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RPS27AP12-201ENST00000429552 465 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MUPP-201ENST00000438111 566 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RPL23AP33-201ENST00000442301 452 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AL590399.6-201ENST00000446396 307 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MTCO2P7-201ENST00000446518 666 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RPS20P24-201ENST00000457473 361 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC091564.1-201ENST00000464563 479 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 RN7SL585P-201ENST00000470538 280 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AF213884.1-201ENST00000488102 463 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC010625.1-201ENST00000511296 403 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 OR5AP1P-201ENST00000529730 940 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC068790.5-201ENST00000602741 355 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC112187.2-201ENST00000604345 283 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AL031666.3-201ENST00000609320 1006 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 U73479.1-201ENST00000618062 168 ntBASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CHMP4CQ96CF2 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 MTCO1P24-201ENST00000515438 1558 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RNU4-21P-201ENST00000362802 126 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 U3.4-201ENST00000363352 213 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RN7SKP266-201ENST00000410232 287 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RNU2-15P-201ENST00000410692 191 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RPS27AP14-201ENST00000422868 454 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC005517.2-201ENST00000424673 553 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL590233.1-201ENST00000430017 456 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 PPIAP3-201ENST00000450588 505 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC009963.2-201ENST00000453431 138 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 HMGB1P15-201ENST00000453854 435 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RAD23BP3-201ENST00000454157 1152 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC146507.1-201ENST00000468335 354 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RNA5SP73-201ENST00000516744 108 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 RN7SKP116-201ENST00000516902 319 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 IFITM8P-201ENST00000522529 394 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AC025884.1-201ENST00000556034 378 ntBASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.05□□□□□ -1.6
CHMP4CQ96CF2 HMGB3P26-201ENST00000560051 582 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms