Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 NPM1P24-201ENST00000428039 894 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC009961.2-201ENST00000435771 251 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 MTND5P14-201ENST00000441481 1267 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 RPL21P89-201ENST00000444021 467 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 MTCO3P20-201ENST00000454926 688 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 RPL7P22-201ENST00000466005 733 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC087312.1-201ENST00000471411 480 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 RPS29P25-201ENST00000481709 171 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 HMGB3P16-201ENST00000508037 287 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 Y_RNA.704-201ENST00000516851 102 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 CENPUP1-201ENST00000526649 1202 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AL512310.1-201ENST00000548639 172 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 RPL21P5-201ENST00000554662 472 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AL512360.1-201ENST00000555346 234 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC022884.3-201ENST00000579571 248 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 MIR4307-201ENST00000582802 84 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 COX6CP4-201ENST00000605798 228 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC010338.1-201ENST00000621823 717 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 AC110994.2-201ENST00000635481 492 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 MTCO1P7-201ENST00000419523 1542 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 RLIMP2-201ENST00000427891 1563 ntBASIC5.72□□□□□ -1.49
USHBP1Q8N6Y0 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
USHBP1Q8N6Y0 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.49
USHBP1Q8N6Y0 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
USHBP1Q8N6Y0 HSPA8P17-201ENST00000427029 1382 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-1085P-201ENST00000363576 107 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-483P-201ENST00000384088 108 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 RNU6-1103P-201ENST00000384150 107 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.608-201ENST00000410647 95 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC009237.10-201ENST00000414112 510 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 USP9YP20-201ENST00000419224 558 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 PIGFP2-201ENST00000421400 651 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 RPS29P7-201ENST00000439662 171 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 MRPL48P1-201ENST00000445390 636 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 YWHAQP9-201ENST00000445891 512 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 NDUFA5P7-201ENST00000452914 242 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 BX322784.1-201ENST00000455793 1077 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 PMCHL2-203ENST00000457791 237 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 RPL38P1-201ENST00000460914 211 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC034236.1-201ENST00000469891 373 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC023598.1-201ENST00000472521 361 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 KLRA1P-201ENST00000503499 986 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC093809.1-201ENST00000509155 340 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 COX6B1P6-201ENST00000522347 255 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC013828.2-201ENST00000532487 235 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 MTCO3P13-201ENST00000577757 781 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 Z98200.1-201ENST00000607298 470 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 PISRT1-201ENST00000626175 531 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AL157700.1-201ENST00000561973 1432 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 OR4G11P-202ENST00000642116 1414 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 AC006026.1-201ENST00000444025 1803 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 FAM91A3P-201ENST00000456826 2544 ntBASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USHBP1Q8N6Y0 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RNA5SP175-201ENST00000364275 119 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RNY4P34-201ENST00000364779 95 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 Y_RNA.409-201ENST00000383990 98 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 RNA5SP171-201ENST00000391071 115 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL356776.1-201ENST00000406574 447 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 EEF1A1P40-201ENST00000412883 573 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 REREP1Y-201ENST00000422655 198 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 AL513174.1-201ENST00000423182 629 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 OR2AH1P-201ENST00000425717 928 ntBASIC5.7□□□□□ -1.5
USHBP1Q8N6Y0 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms