Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MIR144-201ENST00000384886 86 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 RPL36AP36-201ENST00000418616 301 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AL645937.1-202ENST00000421799 937 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 UBE2V1P6-201ENST00000430840 422 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 RPL37P1-201ENST00000432310 284 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 ST13P20-201ENST00000447996 1065 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AP002345.1-201ENST00000456493 928 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 BTF3P5-201ENST00000457252 467 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 snoU13.24-201ENST00000458998 104 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AC096992.1-201ENST00000459808 709 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 RN7SL542P-201ENST00000467147 294 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AC023424.2-201ENST00000493479 777 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 CDC42P4-201ENST00000510507 563 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 RNU1-104P-201ENST00000517280 175 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 ERHP1-201ENST00000523006 310 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 MTND2P26-201ENST00000528255 1029 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 MYL12BP1-201ENST00000569826 507 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AC006130.2-201ENST00000586202 326 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AL137847.3-201ENST00000611521 109 ntBASIC2.5□□□□□ -2.01
CCDC58Q4VC31 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC58Q4VC31 AC092593.1-201ENST00000515413 1815 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC135776.4-201ENST00000624300 1904 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RNA5SP139-201ENST00000364340 117 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RNU6-1251P-201ENST00000364502 107 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 SNORA67.1-201ENST00000364749 141 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 MIR200C-201ENST00000384980 68 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 PTMAP2-201ENST00000397627 327 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC080125.1-201ENST00000414888 684 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AL389915.1-201ENST00000422463 466 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC005517.2-201ENST00000424673 553 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 TRGV7-201ENST00000427089 353 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC005300.1-201ENST00000428401 373 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC005326.1-201ENST00000429197 123 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC091862.1-201ENST00000438016 1100 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 PRDX3P3-201ENST00000447765 522 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC003982.1-202ENST00000469928 248 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RPS27P27-201ENST00000498779 255 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 PSMA2P1-201ENST00000526365 646 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 MIR5004-201ENST00000579078 107 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 MIR4697-201ENST00000582977 78 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC012493.2-201ENST00000595083 291 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC008687.2-201ENST00000597865 520 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC58Q4VC31 IGHV3-29-201ENST00000604817 344 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AL137843.1-201ENST00000605078 385 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 AC006963.1-201ENST00000624003 1052 ntBASIC2.49□□□□□ -2.01
CCDC58Q4VC31 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 SAGE4P-201ENST00000442271 3381 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 MIR627-201ENST00000384979 97 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 MTCYBP24-201ENST00000420387 1106 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AL606495.1-201ENST00000422100 813 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AL606490.7-201ENST00000433136 191 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 MRPL50P4-201ENST00000446432 475 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 VN1R34P-201ENST00000447387 883 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AL031183.1-201ENST00000457667 207 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AC135721.1-201ENST00000497954 479 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AC026412.2-201ENST00000512270 1075 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 NOP56P3-201ENST00000549457 385 ntBASIC2.48□□□□□ -2.01
CCDC58Q4VC31 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC58Q4VC31 COX6CP3-201ENST00000580869 223 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms