Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AC007390.1-201ENST00000415722 356 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AC092634.6-201ENST00000418558 192 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 BTF3L4P3-201ENST00000418879 476 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 YWHAQP9-201ENST00000445891 512 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 Z82190.1-201ENST00000454534 490 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 MTCO1P42-201ENST00000457379 726 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 RPL23AP71-201ENST00000470966 469 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AL132838.2-201ENST00000492041 314 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AC106872.3-201ENST00000495104 446 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 RNU6-150P-201ENST00000516237 95 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 COX6B1P6-201ENST00000522347 255 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.51□□□□□ -1.69
COL4A3Q01955 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AC022884.3-201ENST00000579571 248 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.51□□□□□ -1.69
COL4A3Q01955 CKS1BP3-201ENST00000600888 237 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 AL162413.1-201ENST00000603198 110 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 MIR7973-1-201ENST00000614683 76 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 uc_338.13-201ENST00000618243 179 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.51□□□□□ -1.69
COL4A3Q01955 AC015871.5-202ENST00000623252 701 ntBASIC4.51□□□□□ -1.69
COL4A3Q01955 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
COL4A3Q01955 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A3Q01955 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
COL4A3Q01955 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
COL4A3Q01955 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 RNU6-1227P-201ENST00000383981 107 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 RPL36AP10-201ENST00000421785 322 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 SDCBPP1-201ENST00000440192 890 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 RPL23AP16-201ENST00000441715 421 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 MTCO1P27-201ENST00000448269 226 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AL162151.2-201ENST00000448875 158 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A3Q01955 RPS20P20-201ENST00000460498 340 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 AC146944.2-203ENST00000502493 354 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC139495.1-202ENST00000513164 354 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 RNU6-1281P-201ENST00000516223 105 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 RNA5SP519-201ENST00000516480 119 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 RNU2-46P-201ENST00000517038 113 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AP003122.4-201ENST00000530980 758 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AC090502.2-201ENST00000549267 280 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 RPL21P12-201ENST00000559810 515 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC011712.1-201ENST00000588959 234 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC013553.2-201ENST00000604244 589 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.5□□□□□ -1.69
COL4A3Q01955 AC090574.1-201ENST00000623186 233 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC139792.3-201ENST00000623525 224 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC008013.2-202ENST00000637965 364 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC010266.2-201ENST00000564741 3255 ntBASIC4.5□□□□□ -1.69
COL4A3Q01955 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.5□□□□□ -1.69
COL4A3Q01955 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A3Q01955 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
COL4A3Q01955 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.5□□□□□ -1.69
COL4A3Q01955 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A3Q01955 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A3Q01955 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
COL4A3Q01955 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
COL4A3Q01955 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
COL4A3Q01955 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
COL4A3Q01955 RNU6-845P-201ENST00000362578 103 ntBASIC4.49□□□□□ -1.69
COL4A3Q01955 SNORD115.1-201ENST00000391109 76 ntBASIC4.49□□□□□ -1.69
COL4A3Q01955 AL603766.1-201ENST00000407763 664 ntBASIC4.49□□□□□ -1.69
COL4A3Q01955 MIR1305-201ENST00000408300 86 ntBASIC4.49□□□□□ -1.69
COL4A3Q01955 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.49□□□□□ -1.69
COL4A3Q01955 AL589872.1-201ENST00000426602 288 ntBASIC4.49□□□□□ -1.69
COL4A3Q01955 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.49□□□□□ -1.69
COL4A3Q01955 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms