Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 SNORD116-23-201ENST00000384645 92 ntBASIC3.62□□□□□ -1.83
PEX3P56589 SNORA40.2-201ENST00000390847 128 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL139098.1-201ENST00000407291 389 ntBASIC3.62□□□□□ -1.83
PEX3P56589 MTATP6P20-201ENST00000414147 562 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC008280.1-201ENST00000418851 412 ntBASIC3.62□□□□□ -1.83
PEX3P56589 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.62□□□□□ -1.83
PEX3P56589 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC3.62□□□□□ -1.83
PEX3P56589 Z93242.1-201ENST00000427102 353 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL513175.1-201ENST00000431492 780 ntBASIC3.62□□□□□ -1.83
PEX3P56589 NANOGP2-201ENST00000435391 727 ntBASIC3.62□□□□□ -1.83
PEX3P56589 GTF2IP7-202ENST00000436677 309 ntBASIC3.62□□□□□ -1.83
PEX3P56589 Z80107.1-201ENST00000436830 412 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL591503.2-201ENST00000442314 1005 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.62□□□□□ -1.83
PEX3P56589 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.62□□□□□ -1.83
PEX3P56589 Z75741.1-201ENST00000446793 314 ntBASIC3.62□□□□□ -1.83
PEX3P56589 COX6CP18-201ENST00000448769 222 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 NPM1P13-201ENST00000452663 865 ntBASIC3.62□□□□□ -1.83
PEX3P56589 TMED11P-201ENST00000479478 690 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC021205.2-201ENST00000480069 347 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC108729.1-201ENST00000487812 947 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC079203.1-201ENST00000487972 404 ntBASIC3.62□□□□□ -1.83
PEX3P56589 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.62□□□□□ -1.83
PEX3P56589 AC048346.1-201ENST00000510247 144 ntBASIC3.62□□□□□ -1.83
PEX3P56589 OR5H4P-201ENST00000510851 923 ntBASIC3.62□□□□□ -1.83
PEX3P56589 ARL2BPP6-201ENST00000512757 439 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.62□□□□□ -1.83
PEX3P56589 LRRC6P1-201ENST00000532188 885 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.62□□□□□ -1.83
PEX3P56589 HIGD1AP1-201ENST00000550979 275 ntBASIC3.62□□□□□ -1.83
PEX3P56589 SERPINE4P-201ENST00000554978 281 ntBASIC3.62□□□□□ -1.83
PEX3P56589 MTCYBP23-201ENST00000558717 1102 ntBASIC3.62□□□□□ -1.83
PEX3P56589 RPL21P12-201ENST00000559810 515 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.62□□□□□ -1.83
PEX3P56589 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.62□□□□□ -1.83
PEX3P56589 CCDC58P3-201ENST00000590792 430 ntBASIC3.62□□□□□ -1.83
PEX3P56589 VN1R83P-201ENST00000595685 445 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL031985.2-201ENST00000600955 480 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC006254.3-201ENST00000603353 884 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AL365503.1-201ENST00000605247 905 ntBASIC3.62□□□□□ -1.83
PEX3P56589 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.62□□□□□ -1.83
PEX3P56589 AL158163.2-201ENST00000619110 700 ntBASIC3.62□□□□□ -1.83
PEX3P56589 AC087821.2-201ENST00000637086 450 ntBASIC3.62□□□□□ -1.83
PEX3P56589 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
PEX3P56589 MTND5P1-201ENST00000445440 1375 ntBASIC3.62□□□□□ -1.83
PEX3P56589 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
PEX3P56589 AL353746.1-201ENST00000566293 6881 ntBASIC3.61□□□□□ -1.83
PEX3P56589 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 SNORA70.4-201ENST00000365509 134 ntBASIC3.61□□□□□ -1.83
PEX3P56589 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.61□□□□□ -1.83
PEX3P56589 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 AL357075.1-201ENST00000404107 726 ntBASIC3.61□□□□□ -1.83
PEX3P56589 RNU6-55P-201ENST00000411092 107 ntBASIC3.61□□□□□ -1.83
PEX3P56589 RNU6-954P-201ENST00000411355 107 ntBASIC3.61□□□□□ -1.83
PEX3P56589 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.61□□□□□ -1.83
PEX3P56589 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC3.61□□□□□ -1.83
PEX3P56589 Z75741.2-201ENST00000417272 1167 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.61□□□□□ -1.83
PEX3P56589 AC012065.2-201ENST00000421295 375 ntBASIC3.61□□□□□ -1.83
PEX3P56589 MTCO2P17-201ENST00000424336 677 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC006946.1-201ENST00000429106 328 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.61□□□□□ -1.83
PEX3P56589 AC010881.1-201ENST00000433830 235 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC105402.2-201ENST00000438503 358 ntBASIC3.61□□□□□ -1.83
PEX3P56589 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.61□□□□□ -1.83
PEX3P56589 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.61□□□□□ -1.83
PEX3P56589 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.61□□□□□ -1.83
PEX3P56589 RPL7P59-201ENST00000447700 943 ntBASIC3.61□□□□□ -1.83
PEX3P56589 CFTRP1-201ENST00000456646 183 ntBASIC3.61□□□□□ -1.83
PEX3P56589 BX510359.1-201ENST00000456973 237 ntBASIC3.61□□□□□ -1.83
PEX3P56589 RPL9P32-201ENST00000464118 620 ntBASIC3.61□□□□□ -1.83
PEX3P56589 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.61□□□□□ -1.83
PEX3P56589 AC078785.3-201ENST00000476607 425 ntBASIC3.61□□□□□ -1.83
PEX3P56589 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 AC110792.2-201ENST00000510278 224 ntBASIC3.61□□□□□ -1.83
PEX3P56589 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC3.61□□□□□ -1.83
PEX3P56589 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.61□□□□□ -1.83
PEX3P56589 AL139174.1-201ENST00000531489 886 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.61□□□□□ -1.83
PEX3P56589 AL845331.3-202ENST00000562856 261 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.61□□□□□ -1.83
PEX3P56589 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.61□□□□□ -1.83
PEX3P56589 AC073657.2-201ENST00000605661 303 ntBASIC3.61□□□□□ -1.83
PEX3P56589 AC034229.4-201ENST00000607861 441 ntBASIC3.61□□□□□ -1.83
PEX3P56589 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 AL355578.1-201ENST00000607405 1328 ntBASIC3.61□□□□□ -1.83
PEX3P56589 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PEX3P56589 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms