Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.18□□□□□ -1.9
PKNOX1P55347 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.18□□□□□ -1.9
PKNOX1P55347 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
PKNOX1P55347 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 RNU6-600P-201ENST00000362524 99 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 RNU6-115P-201ENST00000364310 107 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC234772.1-201ENST00000377927 937 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 RNU6-629P-201ENST00000384061 103 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 RNU6-339P-201ENST00000384310 107 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 Y_RNA.493-201ENST00000384422 102 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AL035405.1-201ENST00000400795 710 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AL603865.2-201ENST00000401679 213 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AL121978.1-201ENST00000402778 359 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 MIR1193-201ENST00000408109 78 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 SNORA11B-201ENST00000408175 129 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 RNU2-71P-201ENST00000411395 189 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 FCF1P2-201ENST00000415284 583 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AL133547.1-201ENST00000448546 220 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 RN7SL75P-201ENST00000461926 281 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 ST13P14-201ENST00000474095 734 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 GAPDHP39-201ENST00000481866 979 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 RPL21P13-201ENST00000488305 481 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 OR5H5P-201ENST00000503164 928 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 RN7SKP244-201ENST00000516513 307 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 OR5B10P-201ENST00000532869 642 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC090330.1-201ENST00000588646 764 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 VN1R87P-201ENST00000596706 487 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.17□□□□□ -1.9
PKNOX1P55347 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC253576.2-201ENST00000618815 580 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AC091903.1-201ENST00000624322 454 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AL034408.1-202ENST00000636088 415 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.17□□□□□ -1.9
PKNOX1P55347 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
PKNOX1P55347 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.17□□□□□ -1.9
PKNOX1P55347 AP001350.1-201ENST00000601906 1524 ntBASIC3.17□□□□□ -1.9
PKNOX1P55347 POMP-202ENST00000460403 1428 ntTSL 3 BASIC3.17□□□□□ -1.9
PKNOX1P55347 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.16□□□□□ -1.9
PKNOX1P55347 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PKNOX1P55347 AC093831.2-201ENST00000624393 3427 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PKNOX1P55347 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
PKNOX1P55347 RNA5SP119-201ENST00000362715 117 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 RNU6-839P-201ENST00000363347 108 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
PKNOX1P55347 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PKNOX1P55347 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 MTCYBP32-201ENST00000427945 1084 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC092634.2-201ENST00000428146 1010 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC005345.1-201ENST00000431868 217 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.16□□□□□ -1.9
PKNOX1P55347 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.16□□□□□ -1.9
PKNOX1P55347 ARF4P4-201ENST00000439608 520 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 NDUFA5P7-201ENST00000452914 242 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC244505.3-201ENST00000454598 187 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 RPL7P5-201ENST00000471472 736 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 MTCO3P35-201ENST00000485582 781 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC093663.1-201ENST00000497190 394 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.16□□□□□ -1.9
PKNOX1P55347 AC026403.1-201ENST00000518938 295 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 TRMT10BP1-201ENST00000519377 943 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.16□□□□□ -1.9
PKNOX1P55347 MTCO1P49-201ENST00000523429 802 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AP004371.1-201ENST00000525240 214 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AP003385.6-201ENST00000531603 374 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.16□□□□□ -1.9
PKNOX1P55347 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.16□□□□□ -1.9
PKNOX1P55347 AL163153.1-201ENST00000554223 283 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 OR4H12P-201ENST00000556269 907 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC012182.1-201ENST00000570133 895 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC008507.2-201ENST00000588402 1176 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AL669831.4-202ENST00000590817 238 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC107294.3-201ENST00000609211 526 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC090116.1-201ENST00000615679 446 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
PKNOX1P55347 AC007275.1-201ENST00000621243 671 ntBASIC3.16□□□□□ -1.9
PKNOX1P55347 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.16□□□□□ -1.9
PKNOX1P55347 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC3.16□□□□□ -1.9
PKNOX1P55347 AL392088.2-201ENST00000637607 285 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms