Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC025181.1-201ENST00000477507 416 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC090525.1-201ENST00000479116 478 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.65□□□□□ -1.99
FOXA1P55317 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.65□□□□□ -1.99
FOXA1P55317 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA1P55317 RNU6-362P-201ENST00000516736 90 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
FOXA1P55317 AC026616.1-201ENST00000523157 525 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA1P55317 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 ELOCP31-201ENST00000540463 467 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 AC010735.1-201ENST00000567305 1026 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.65□□□□□ -1.99
FOXA1P55317 AC016877.3-201ENST00000606778 504 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC011374.2-201ENST00000607135 526 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AC004775.1-201ENST00000607389 753 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA1P55317 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA1P55317 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AL355578.1-201ENST00000607405 1328 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA1P55317 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA1P55317 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA1P55317 MIR1303-201ENST00000408625 86 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 RNU2-17P-201ENST00000410290 190 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 EEF1A1P41-201ENST00000414667 207 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 RPL35AP12-201ENST00000425362 338 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 RPL21P40-201ENST00000428586 483 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA1P55317 AL691517.1-201ENST00000440833 1235 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 ARL5AP2-201ENST00000444698 533 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 MTND2P6-201ENST00000455337 1030 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC017015.1-201ENST00000477387 286 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC110792.2-201ENST00000510278 224 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA1P55317 AL163153.1-201ENST00000554223 283 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA1P55317 GTF2IP8-201ENST00000560687 584 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC005951.1-201ENST00000576706 485 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.64□□□□□ -1.99
FOXA1P55317 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC018618.2-201ENST00000604770 446 ntBASIC2.64□□□□□ -1.99
FOXA1P55317 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
FOXA1P55317 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA1P55317 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA1P55317 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.63□□□□□ -1.99
FOXA1P55317 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA1P55317 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA1P55317 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA1P55317 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA1P55317 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA1P55317 RNA5SP391-201ENST00000363456 119 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 RNA5SP189-201ENST00000364920 115 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 HMGB1P10-201ENST00000395823 563 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AL356057.1-202ENST00000402263 756 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 VTA1P1-201ENST00000414044 866 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA1P55317 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC008065.1-201ENST00000428525 348 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA1P55317 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA1P55317 HMGN2P20-201ENST00000437531 273 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA1P55317 HMGB1P25-201ENST00000468402 607 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 RPL21P103-201ENST00000479921 488 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA1P55317 CIR1P1-201ENST00000524055 1133 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA1P55317 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 AC011468.4-201ENST00000603942 409 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC091488.1-201ENST00000604239 660 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC135178.6-201ENST00000605314 398 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC018754.1-201ENST00000607486 925 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC004832.5-201ENST00000608677 401 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC105429.2-201ENST00000610567 517 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 AC243756.2-201ENST00000618406 463 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA1P55317 LRRC77P-213ENST00000637727 880 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 ZNF33CP-201ENST00000432492 2030 ntBASIC2.63□□□□□ -1.99
FOXA1P55317 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA1P55317 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms