Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC012433.1-201ENST00000588916 398 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC008521.2-201ENST00000591021 259 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL713866.2-201ENST00000603579 219 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL022394.1-201ENST00000606979 292 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC092266.1-201ENST00000610958 165 ntBASIC5.66□□□□□ -1.5
MSX1P28360 FAM27E2-201ENST00000619668 403 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL589994.2-201ENST00000621124 579 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AC091925.2-201ENST00000625059 256 ntBASIC5.66□□□□□ -1.5
MSX1P28360 AL591135.1-201ENST00000401578 5914 ntBASIC5.66□□□□□ -1.5
MSX1P28360 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.66□□□□□ -1.5
MSX1P28360 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX1P28360 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
MSX1P28360 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSX1P28360 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
MSX1P28360 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.65□□□□□ -1.5
MSX1P28360 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 AOX3P-204ENST00000491025 2107 ntBASIC5.65□□□□□ -1.5
MSX1P28360 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 Y_RNA.150-201ENST00000363562 102 ntBASIC5.65□□□□□ -1.5
MSX1P28360 SMIM11P1-201ENST00000369586 178 ntBASIC5.65□□□□□ -1.5
MSX1P28360 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 Y_RNA.416-201ENST00000384014 113 ntBASIC5.65□□□□□ -1.5
MSX1P28360 Y_RNA.462-201ENST00000384268 102 ntBASIC5.65□□□□□ -1.5
MSX1P28360 RNU6-1156P-201ENST00000410365 100 ntBASIC5.65□□□□□ -1.5
MSX1P28360 RNA5SP111-201ENST00000411386 101 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AC016769.2-201ENST00000414815 475 ntBASIC5.65□□□□□ -1.5
MSX1P28360 RAC1P3-201ENST00000416129 580 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.65□□□□□ -1.5
MSX1P28360 RPS3P2-201ENST00000421346 701 ntBASIC5.65□□□□□ -1.5
MSX1P28360 HMGB3P24-201ENST00000433260 622 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.65□□□□□ -1.5
MSX1P28360 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC073410.1-201ENST00000435125 589 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AL391987.1-201ENST00000441025 200 ntBASIC5.65□□□□□ -1.5
MSX1P28360 CYCSP51-201ENST00000443545 318 ntBASIC5.65□□□□□ -1.5
MSX1P28360 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC010733.1-201ENST00000451515 401 ntBASIC5.65□□□□□ -1.5
MSX1P28360 FABP5P13-201ENST00000452144 328 ntBASIC5.65□□□□□ -1.5
MSX1P28360 PPIAP27-201ENST00000453800 265 ntBASIC5.65□□□□□ -1.5
MSX1P28360 RPS27AP3-201ENST00000453803 454 ntBASIC5.65□□□□□ -1.5
MSX1P28360 snoU13.7-201ENST00000459220 104 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AC022034.3-201ENST00000471393 478 ntBASIC5.65□□□□□ -1.5
MSX1P28360 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC092436.3-201ENST00000511788 257 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AC139365.2-201ENST00000517972 253 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AC084783.1-201ENST00000565846 910 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AC027229.1-201ENST00000583887 253 ntBASIC5.65□□□□□ -1.5
MSX1P28360 AL136084.2-213ENST00000585704 690 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 AC104687.2-201ENST00000604442 342 ntBASIC5.65□□□□□ -1.5
MSX1P28360 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.65□□□□□ -1.5
MSX1P28360 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC5.65□□□□□ -1.5
MSX1P28360 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
MSX1P28360 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.65□□□□□ -1.51
MSX1P28360 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
MSX1P28360 EIF2AP4-201ENST00000424793 1781 ntBASIC5.65□□□□□ -1.51
MSX1P28360 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC5.65□□□□□ -1.51
MSX1P28360 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSX1P28360 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
MSX1P28360 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 PANDAR-201ENST00000629595 1506 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AP001541.1-201ENST00000623322 1904 ntBASIC5.64□□□□□ -1.51
MSX1P28360 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
MSX1P28360 RNU6-190P-201ENST00000384154 102 ntBASIC5.64□□□□□ -1.51
MSX1P28360 SNORA51.9-201ENST00000384295 124 ntBASIC5.64□□□□□ -1.51
MSX1P28360 RNU6-754P-201ENST00000391166 107 ntBASIC5.64□□□□□ -1.51
MSX1P28360 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 AL138885.1-201ENST00000405921 675 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.64□□□□□ -1.51
MSX1P28360 UBE2V1P4-201ENST00000425374 344 ntBASIC5.64□□□□□ -1.51
MSX1P28360 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
MSX1P28360 RPL12P17-201ENST00000432393 498 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms