Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNA5SP217-201ENST00000515959 91 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 FAM60DP-201ENST00000524174 632 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 Z73965.1-201ENST00000623412 2297 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL6A3P12111 AC069528.2-201ENST00000624849 1991 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL6A3P12111 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
COL6A3P12111 RN7SKP140-201ENST00000411196 284 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 GLRXP1-201ENST00000423261 334 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 RPL23AP22-201ENST00000437556 453 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.49□□□□□ -2.01
COL6A3P12111 AC092628.2-201ENST00000622492 339 ntBASIC2.49□□□□□ -2.01
COL6A3P12111 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
COL6A3P12111 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.49□□□□□ -2.01
COL6A3P12111 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL6A3P12111 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC2.48□□□□□ -2.01
COL6A3P12111 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL6A3P12111 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
COL6A3P12111 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC2.48□□□□□ -2.01
COL6A3P12111 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.48□□□□□ -2.01
COL6A3P12111 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.48□□□□□ -2.01
COL6A3P12111 PSMA3P-201ENST00000555485 635 ntBASIC2.48□□□□□ -2.01
COL6A3P12111 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL6A3P12111 Y_RNA.354-201ENST00000365448 111 ntBASIC2.48□□□□□ -2.01
COL6A3P12111 AP000936.3-201ENST00000438127 255 ntBASIC2.48□□□□□ -2.01
COL6A3P12111 RPL23AP76-201ENST00000441860 458 ntBASIC2.48□□□□□ -2.01
COL6A3P12111 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.48□□□□□ -2.01
COL6A3P12111 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC2.48□□□□□ -2.01
COL6A3P12111 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC2.48□□□□□ -2.01
COL6A3P12111 AC006971.1-201ENST00000407916 4486 ntBASIC2.48□□□□□ -2.01
COL6A3P12111 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
COL6A3P12111 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
COL6A3P12111 MIR148B-201ENST00000362252 99 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.47□□□□□ -2.01
COL6A3P12111 SNORA51.11-201ENST00000384442 131 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.47□□□□□ -2.01
COL6A3P12111 AC016687.1-201ENST00000482574 353 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AC021146.8-201ENST00000507455 733 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 RFESD-208ENST00000513950 464 ntTSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 PVT1_3.1-201ENST00000620853 95 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AC103858.2-201ENST00000621471 543 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 OR1S1-201ENST00000624470 978 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 MTCO1P22-201ENST00000604619 1360 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 SPATA2P1-201ENST00000431223 2055 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 RNU4-62P-201ENST00000410125 130 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 IGLV3-17-201ENST00000519099 244 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 OR5D17P-201ENST00000531492 978 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AL354943.1-201ENST00000572103 781 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL6A3P12111 AC004987.3-201ENST00000413879 771 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 HMGN1P33-201ENST00000432945 451 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 PPIAP17-201ENST00000438507 471 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC2.47□□□□□ -2.01
COL6A3P12111 TGIF1P1-201ENST00000558095 802 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC2.47□□□□□ -2.01
COL6A3P12111 CR381653.2-201ENST00000624041 768 ntBASIC2.47□□□□□ -2.01
COL6A3P12111 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
COL6A3P12111 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
COL6A3P12111 RNU6-316P-201ENST00000391027 107 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 RHEBP3-201ENST00000411920 351 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AC009237.2-201ENST00000421358 284 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 BX679664.1-201ENST00000434429 253 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AL121877.1-201ENST00000453704 622 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 MIR2276-201ENST00000516886 89 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.46□□□□□ -2.02
COL6A3P12111 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL6A3P12111 ERHP2-201ENST00000402323 299 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC2.46□□□□□ -2.02
COL6A3P12111 AL591719.1-201ENST00000444669 744 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.46□□□□□ -2.02
COL6A3P12111 ARL2BPP2-201ENST00000550907 489 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.46□□□□□ -2.02
COL6A3P12111 AC090229.1-201ENST00000590983 1609 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 BX248123.2-201ENST00000606318 124 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 AC022709.1-201ENST00000615967 87 ntBASIC2.46□□□□□ -2.02
COL6A3P12111 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.46□□□□□ -2.02
COL6A3P12111 MIR583-201ENST00000384846 75 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 RNU6-55P-201ENST00000411092 107 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 RNU6-954P-201ENST00000411355 107 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 MTND4LP16-201ENST00000440828 295 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC021146.1-201ENST00000511202 716 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 MIR2114-201ENST00000516645 80 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL6A3P12111 AC138915.3-201ENST00000562908 1389 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 AC093311.1-201ENST00000506586 2021 ntBASIC2.45□□□□□ -2.02
COL6A3P12111 SNORD114-22-201ENST00000365423 72 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms