Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 OR6K5P-201ENST00000447050 945 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 PRDX3P3-201ENST00000447765 522 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 RPL37P6-202ENST00000464216 403 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD4P09016 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD4P09016 AC012170.1-201ENST00000495139 359 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.43□□□□□ -1.86
HOXD4P09016 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 SNORA70.24-201ENST00000517233 118 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD4P09016 OSBPL9P5-201ENST00000542581 171 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC010198.2-201ENST00000550612 259 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 NBEAP1-201ENST00000554452 979 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 GNRHR2P1-201ENST00000555315 631 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 CENPUP2-201ENST00000555897 1186 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AL121576.1-201ENST00000556055 276 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC069545.1-201ENST00000605671 358 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC092354.2-201ENST00000607786 514 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC022509.4-201ENST00000621404 572 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 AC131159.1-201ENST00000621854 213 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 RNU6-156P-201ENST00000621869 107 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 FAM157B-203ENST00000639350 358 ntBASIC3.43□□□□□ -1.86
HOXD4P09016 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
HOXD4P09016 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD4P09016 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD4P09016 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.43□□□□□ -1.86
HOXD4P09016 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 AC012321.1-201ENST00000561622 1588 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 NMD3P1-201ENST00000439704 1488 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC006504.1-201ENST00000562493 3666 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 OR5H2-201ENST00000355273 945 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXD4P09016 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 Y_RNA.169-201ENST00000363745 96 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 RNU6-560P-201ENST00000364007 108 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 RNU4-40P-201ENST00000364351 143 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 SNORA70E-201ENST00000384492 135 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 MIR217-201ENST00000384817 110 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 MIR153-1-201ENST00000384914 90 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXD4P09016 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 RPS29P4-201ENST00000414733 161 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AC068533.1-201ENST00000418542 415 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 RPS15AP6-201ENST00000420703 385 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 RPL7P44-201ENST00000424827 742 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 MTND1P32-201ENST00000433043 938 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 KCTD9P3-201ENST00000434597 1169 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 SKP1P1-201ENST00000438081 489 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 CFTRP1-201ENST00000456646 183 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 SNORD105B-201ENST00000458770 79 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AC146507.1-201ENST00000468335 354 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.42□□□□□ -1.86
HOXD4P09016 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC109471.1-201ENST00000511631 612 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXD4P09016 RN7SKP18-201ENST00000516005 275 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 MTND2P26-201ENST00000528255 1029 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AP001317.1-201ENST00000531194 960 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC008088.1-201ENST00000580993 280 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD4P09016 AL390816.3-201ENST00000604527 1066 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL160281.1-201ENST00000605307 311 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 U3.45-201ENST00000607547 219 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC023158.2-201ENST00000614876 543 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD4P09016 AC004943.3-201ENST00000624116 600 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 U6.98-201ENST00000637157 84 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 AL773545.4-201ENST00000637262 310 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD4P09016 AL513478.4-201ENST00000641636 310 ntBASIC3.42□□□□□ -1.86
HOXD4P09016 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD4P09016 ZNF542P-204ENST00000482727 1305 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms