Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 TRGVB-201ENST00000453257 471 ntBASIC3.69□□□□□ -1.82
VIMP08670 RPS23P7-201ENST00000466210 444 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC011276.1-201ENST00000469688 323 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.69□□□□□ -1.82
VIMP08670 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
VIMP08670 AC013356.1-201ENST00000489027 564 ntBASIC3.69□□□□□ -1.82
VIMP08670 MTCYBP17-201ENST00000503579 789 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC092593.2-201ENST00000513866 913 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.69□□□□□ -1.82
VIMP08670 MED28P5-201ENST00000528254 438 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.69□□□□□ -1.82
VIMP08670 SYF2P1-201ENST00000550658 413 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC126177.3-201ENST00000551839 688 ntBASIC3.69□□□□□ -1.82
VIMP08670 TRAV37-201ENST00000553906 342 ntBASIC3.69□□□□□ -1.82
VIMP08670 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.69□□□□□ -1.82
VIMP08670 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.69□□□□□ -1.82
VIMP08670 AC068831.4-201ENST00000556118 109 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC087481.2-201ENST00000565492 330 ntBASIC3.69□□□□□ -1.82
VIMP08670 MIR4637-201ENST00000582405 84 ntBASIC3.69□□□□□ -1.82
VIMP08670 BNIP3P38-201ENST00000601117 544 ntBASIC3.69□□□□□ -1.82
VIMP08670 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.69□□□□□ -1.82
VIMP08670 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.69□□□□□ -1.82
VIMP08670 DUXAP3-201ENST00000603616 594 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC024940.4-201ENST00000605507 246 ntBASIC3.69□□□□□ -1.82
VIMP08670 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.69□□□□□ -1.82
VIMP08670 AL451074.6-201ENST00000608512 729 ntBASIC3.69□□□□□ -1.82
VIMP08670 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.69□□□□□ -1.82
VIMP08670 MIR3653-201ENST00000625572 110 ntBASIC3.69□□□□□ -1.82
VIMP08670 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.69□□□□□ -1.82
VIMP08670 AL513302.2-201ENST00000562313 1842 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC139713.2-214ENST00000642059 1811 ntBASIC3.69□□□□□ -1.82
VIMP08670 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VIMP08670 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VIMP08670 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VIMP08670 AP002907.1-201ENST00000606361 1430 ntBASIC3.69□□□□□ -1.82
VIMP08670 AC010733.2-201ENST00000589496 5702 ntBASIC3.68□□□□□ -1.82
VIMP08670 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.68□□□□□ -1.82
VIMP08670 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.68□□□□□ -1.82
VIMP08670 LARP1BP1-201ENST00000506036 1359 ntBASIC3.68□□□□□ -1.82
VIMP08670 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 RNU1-75P-201ENST00000347264 129 ntBASIC3.68□□□□□ -1.82
VIMP08670 RNU4-92P-201ENST00000363783 136 ntBASIC3.68□□□□□ -1.82
VIMP08670 Y_RNA.192-201ENST00000363977 102 ntBASIC3.68□□□□□ -1.82
VIMP08670 SNORA51.2-201ENST00000364595 132 ntBASIC3.68□□□□□ -1.82
VIMP08670 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 RNU6-1181P-201ENST00000384191 106 ntBASIC3.68□□□□□ -1.82
VIMP08670 RNU6-1122P-201ENST00000384449 107 ntBASIC3.68□□□□□ -1.82
VIMP08670 RNU6-878P-201ENST00000384578 110 ntBASIC3.68□□□□□ -1.82
VIMP08670 RNU6-636P-201ENST00000384598 107 ntBASIC3.68□□□□□ -1.82
VIMP08670 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 Z97055.1-201ENST00000419730 712 ntBASIC3.68□□□□□ -1.82
VIMP08670 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.68□□□□□ -1.82
VIMP08670 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 MTND2P9-201ENST00000422293 931 ntBASIC3.68□□□□□ -1.82
VIMP08670 USP9YP11-201ENST00000427537 717 ntBASIC3.68□□□□□ -1.82
VIMP08670 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 BX679664.1-201ENST00000434429 253 ntBASIC3.68□□□□□ -1.82
VIMP08670 Z74696.2-201ENST00000436514 498 ntBASIC3.68□□□□□ -1.82
VIMP08670 RPL23AP74-201ENST00000437246 471 ntBASIC3.68□□□□□ -1.82
VIMP08670 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VIMP08670 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.68□□□□□ -1.82
VIMP08670 RPS3AP46-201ENST00000448352 682 ntBASIC3.68□□□□□ -1.82
VIMP08670 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 OFD1P3Y-201ENST00000453312 783 ntBASIC3.68□□□□□ -1.82
VIMP08670 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.68□□□□□ -1.82
VIMP08670 snoU13.24-201ENST00000458998 104 ntBASIC3.68□□□□□ -1.82
VIMP08670 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 RPS27AP13-201ENST00000498403 237 ntBASIC3.68□□□□□ -1.82
VIMP08670 AC020893.1-201ENST00000502452 580 ntBASIC3.68□□□□□ -1.82
VIMP08670 TMEM251P1-201ENST00000503717 318 ntBASIC3.68□□□□□ -1.82
VIMP08670 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 RNY4P37-201ENST00000516225 96 ntBASIC3.68□□□□□ -1.82
VIMP08670 RNA5SP164-201ENST00000516533 110 ntBASIC3.68□□□□□ -1.82
VIMP08670 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.68□□□□□ -1.82
VIMP08670 CR383656.6-201ENST00000550518 394 ntBASIC3.68□□□□□ -1.82
VIMP08670 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.68□□□□□ -1.82
VIMP08670 MIR3690-201ENST00000580266 75 ntBASIC3.68□□□□□ -1.82
VIMP08670 SNORA62.6-201ENST00000606322 83 ntBASIC3.68□□□□□ -1.82
VIMP08670 AC243773.3-201ENST00000613270 256 ntBASIC3.68□□□□□ -1.82
VIMP08670 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VIMP08670 AC006963.1-201ENST00000624003 1052 ntBASIC3.68□□□□□ -1.82
VIMP08670 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.68□□□□□ -1.82
VIMP08670 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.68□□□□□ -1.82
VIMP08670 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VIMP08670 MAPK10-362ENST00000641864 4484 ntBASIC3.67□□□□□ -1.82
VIMP08670 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VIMP08670 RNA5SP42-201ENST00000364278 115 ntBASIC3.67□□□□□ -1.82
VIMP08670 RNA5SP97-201ENST00000365006 84 ntBASIC3.67□□□□□ -1.82
VIMP08670 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VIMP08670 Y_RNA.465-201ENST00000384293 102 ntBASIC3.67□□□□□ -1.82
VIMP08670 RNA5SP424-201ENST00000390988 115 ntBASIC3.67□□□□□ -1.82
VIMP08670 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.67□□□□□ -1.82
VIMP08670 RPS7P15-201ENST00000415804 584 ntBASIC3.67□□□□□ -1.82
VIMP08670 RPL21P66-201ENST00000426566 466 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms