Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RN7SKP104-201ENST00000362605 328 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RNU1-74P-201ENST00000384108 171 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 SNORA51.8-201ENST00000384234 132 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RPL7P60-201ENST00000397636 735 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 DDX39BP1-205ENST00000422507 192 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RPL36P19-201ENST00000430744 301 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL356010.1-201ENST00000456364 102 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AP1S2P1-201ENST00000457344 379 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC007547.1-201ENST00000462177 490 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC231760.1-201ENST00000498002 260 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RNU6-559P-201ENST00000516151 98 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RNU6-410P-201ENST00000517006 107 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AP000907.2-201ENST00000530827 353 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 VN1R84P-201ENST00000593697 235 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC080078.3-201ENST00000605407 463 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 RNU6-89P-201ENST00000606519 100 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL627230.1-201ENST00000613077 211 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC084781.2-201ENST00000615568 161 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AC100827.5-201ENST00000615883 426 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AL591926.8-201ENST00000616876 211 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 AP001784.1-201ENST00000624107 428 ntBASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 ATM-228ENST00000639240 498 ntTSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
CHMP3Q9Y3E7 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 AC107081.3-201ENST00000612715 2034 ntBASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 MTND5P33-201ENST00000571250 1450 ntBASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 VPS35P1-201ENST00000563400 1518 ntBASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
CHMP3Q9Y3E7 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC073343.1-201ENST00000328239 651 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-463P-201ENST00000384340 107 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 MIR649-201ENST00000384843 97 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 SNORD37.1-201ENST00000390968 65 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RNU4-14P-201ENST00000410858 122 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-1304P-201ENST00000411374 106 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC012065.2-201ENST00000421295 375 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 HSPE1P1-201ENST00000421494 318 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AL590639.1-201ENST00000456484 337 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RN7SL814P-201ENST00000487715 300 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC106872.2-201ENST00000494303 480 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RPS24P16-201ENST00000497294 392 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.718-201ENST00000517110 102 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC006270.2-201ENST00000578523 652 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AL080274.1-201ENST00000605565 220 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 AC091905.4-201ENST00000623432 202 ntBASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CHMP3Q9Y3E7 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL031595.2-201ENST00000624215 19071 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 MIR133A2-201ENST00000347538 102 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 Y_RNA.445-201ENST00000384168 102 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 RNU6-606P-201ENST00000384721 111 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 SNORA66-201ENST00000384792 133 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL356421.1-201ENST00000403255 413 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 GPS2P1-201ENST00000411761 986 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC113618.1-201ENST00000416747 285 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 RPL7AP49-201ENST00000429522 581 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 AL591438.1-201ENST00000433508 581 ntBASIC6.38□□□□□ -1.39
CHMP3Q9Y3E7 ERLEC1P1-201ENST00000433806 578 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms