Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC005618.1-201ENST00000606901 3148 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RNA5SP267-201ENST00000364893 126 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD63-201ENST00000384262 68 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RNU6-225P-201ENST00000384613 103 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 MIR569-201ENST00000385228 96 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 MIR323B-201ENST00000385269 82 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RNU2-15P-201ENST00000410692 191 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 EZH2P1-201ENST00000431167 291 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AL137159.1-201ENST00000452808 512 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC079168.2-201ENST00000453977 416 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 TREML3P-201ENST00000457327 501 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.686-201ENST00000516548 134 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RN7SL208P-201ENST00000577964 296 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 MIR3684-201ENST00000579779 74 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 BDH2P1-201ENST00000602288 736 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
VPS9D1Q9Y2B5 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 MSL3P1-202ENST00000440028 1468 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 SNORD82-201ENST00000365530 70 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 RNU6-1056P-201ENST00000383996 107 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 MIR190B-201ENST00000401119 79 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AL133260.1-201ENST00000405720 405 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC234779.1-201ENST00000425910 285 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 PTMAP6-201ENST00000439110 327 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 NOP56P2-201ENST00000447491 769 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC009244.1-201ENST00000450566 258 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 RN7SL372P-201ENST00000461982 298 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC022730.1-201ENST00000473114 568 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC092824.1-201ENST00000483524 576 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC004453.1-201ENST00000487895 408 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 MIR2355-201ENST00000517199 87 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 IGLVVII-41-1-201ENST00000518405 151 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC025755.1-201ENST00000521306 278 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AP002001.1-203ENST00000534002 267 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 Y_RNA.802-201ENST00000614892 130 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AP001264.1-201ENST00000620602 703 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC061999.1-201ENST00000624454 177 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AL132640.3-201ENST00000630473 177 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AL161901.1-201ENST00000624954 3425 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 SMG1P5-202ENST00000529428 4219 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 SMG1P2-201ENST00000566127 4221 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 CYP3A5-201ENST00000222982 1720 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 AC062029.1-202ENST00000606164 3651 ntBASIC6.53□□□□□ -1.36
VPS9D1Q9Y2B5 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC6.52□□□□□ -1.37
VPS9D1Q9Y2B5 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms