Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL162395.1-201ENST00000457882 422 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 MTND4P17-201ENST00000470444 350 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL135752.1-201ENST00000479477 471 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC105417.1-201ENST00000514691 285 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC023813.4-201ENST00000607580 580 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AP005432.2-201ENST00000608162 586 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC126915.2-201ENST00000610957 190 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC084781.2-201ENST00000615568 161 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC099494.2-201ENST00000623371 978 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RNU6-216P-201ENST00000363282 104 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 SUGT1P1-201ENST00000379514 476 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.476-201ENST00000384347 108 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 SNORD116-29-201ENST00000384516 83 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1222P-201ENST00000384615 107 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AL592291.1-201ENST00000403830 352 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 OR51AB1P-201ENST00000429046 620 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RPL26P28-201ENST00000451325 435 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RNU6-261P-201ENST00000459506 102 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC110749.1-201ENST00000462007 357 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RPL21P6-201ENST00000479171 504 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 POU5F1P7-201ENST00000508759 541 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 snoU109.6-201ENST00000516831 118 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1271P-201ENST00000517049 105 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RNU6-1137P-201ENST00000517073 99 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.718-201ENST00000517110 102 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 RN7SKP256-201ENST00000517201 314 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC125612.1-201ENST00000547580 377 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 MIR544B-201ENST00000582372 78 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 U4.1-201ENST00000620349 87 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 MTND4LP32-201ENST00000636111 270 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 DHX9P1-201ENST00000436565 3076 ntBASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC39Q9UFE4 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 CD36-221ENST00000534394 1741 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RNU6-223P-201ENST00000362830 107 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RNU6-452P-201ENST00000384406 107 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 SNORD115.1-201ENST00000391109 76 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 MIR548F4-201ENST00000408515 105 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AP000534.2-201ENST00000412729 568 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AL450992.3-201ENST00000413192 568 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 OR51A3P-201ENST00000413596 924 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 CYCSP10-201ENST00000417973 294 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 MTATP6P18-201ENST00000417994 673 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC079355.1-201ENST00000421770 223 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 PMCHL1-202ENST00000423102 261 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC073587.1-201ENST00000447093 876 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 RNU6-329P-201ENST00000459618 107 ntBASIC5.72□□□□□ -1.49
CCDC39Q9UFE4 AC010655.3-201ENST00000478818 450 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms