Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC027807.2-201ENST00000616099 408 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL596245.1-201ENST00000618994 362 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AC024614.3-201ENST00000637860 256 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 AL022322.2-201ENST00000624072 20397 ntBASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLIP3Q96DZ5 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC006378.2-201ENST00000623178 2476 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 MTND5P3-201ENST00000438536 1800 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RNU6-989P-201ENST00000362756 107 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 Y_RNA.89-201ENST00000363031 102 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RNA5SP428-201ENST00000365129 132 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 MIR124-3-201ENST00000384866 87 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RN7SKP285-201ENST00000410137 318 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 COX6B1P1-201ENST00000415962 213 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CHEK2P3-201ENST00000416118 248 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 FABP7P1-201ENST00000424004 391 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC006548.1-201ENST00000427470 102 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 ELOCP14-201ENST00000428070 331 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 EZH2P1-201ENST00000431167 291 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RPS3AP54-201ENST00000435535 734 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RPL37P21-201ENST00000435890 276 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC104850.1-201ENST00000435940 476 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RSU1P2-202ENST00000437884 485 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 ELOCP7-201ENST00000439968 331 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 Z80107.2-201ENST00000445127 392 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 RPL7P52-201ENST00000449200 742 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AL033528.1-201ENST00000453780 140 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 OR6K1P-201ENST00000456766 971 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC108145.1-201ENST00000503770 153 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC009646.1-201ENST00000510455 318 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC093677.1-201ENST00000514414 678 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 PAICSP4-201ENST00000517543 1253 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CDH12P4-201ENST00000517835 295 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CDH12P3-201ENST00000517935 295 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 MTCO2P4-201ENST00000517968 247 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CDH12P1-201ENST00000518435 295 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC008277.2-201ENST00000605196 797 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC019193.2-201ENST00000610012 634 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC091953.3-201ENST00000623220 236 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC040168.1-201ENST00000623594 991 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 AC091925.2-201ENST00000625059 256 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CR381572.1-201ENST00000625098 102 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CRYM-AS1-204ENST00000637983 556 ntBASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLIP3Q96DZ5 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CLIP3Q96DZ5 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CLIP3Q96DZ5 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.84□□□□□ -1.64
CLIP3Q96DZ5 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AC025031.4-201ENST00000621248 3271 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RN7SKP95-201ENST00000362860 303 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 Y_RNA.97-201ENST00000363094 102 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 Y_RNA.160-201ENST00000363677 92 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RNU5E-5P-201ENST00000365379 116 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RNU6-744P-201ENST00000365557 107 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RNU6-1316P-201ENST00000384242 108 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 SNORD51-201ENST00000384320 80 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 U8.14-201ENST00000390843 143 ntBASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLIP3Q96DZ5 AL121834.1-202ENST00000404494 277 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms