Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RNU1-103P-201ENST00000516502 125 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 OR4P1P-201ENST00000530808 1136 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC092851.1-201ENST00000535964 478 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MTCYBP27-201ENST00000555160 670 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC087481.2-201ENST00000565492 330 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MIR4666A-201ENST00000580160 79 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 PLCE1P1-201ENST00000622094 305 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AL049781.1-201ENST00000623195 3585 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 AL645568.2-201ENST00000432815 1337 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 NUP58P1-201ENST00000502546 1738 ntBASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HDDC3Q8N4P3 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 RNU5B-4P-201ENST00000363508 111 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 MIR490-201ENST00000384865 128 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 MIR591-201ENST00000385290 95 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 MTCO3P1-205ENST00000422088 832 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AL645931.1-201ENST00000439737 410 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC026414.1-201ENST00000504046 698 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 BOLA3P3-201ENST00000505182 232 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 RANP9-201ENST00000519957 271 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC141257.3-201ENST00000572906 215 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC092954.1-201ENST00000609121 445 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AL590240.3-201ENST00000621416 943 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AC091152.2-201ENST00000591628 2569 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 AL079305.1-201ENST00000623159 3008 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 GDI2P1-201ENST00000429312 1336 ntBASIC3.66□□□□□ -1.82
HDDC3Q8N4P3 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HDDC3Q8N4P3 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 RNU6-1066P-201ENST00000363573 105 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AL603865.2-201ENST00000401679 213 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 RNA5SP120-201ENST00000410900 112 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 HMGB3P20-201ENST00000417997 600 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC092754.2-201ENST00000463506 460 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 RPS27AP1-201ENST00000475545 471 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC016550.1-201ENST00000505348 785 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 RNU1-61P-201ENST00000516107 151 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC103843.2-201ENST00000530523 682 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC092451.2-201ENST00000538746 658 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC007458.1-201ENST00000542812 373 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 TRAV15-201ENST00000556680 249 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 MIR4513-201ENST00000581077 86 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AP001029.3-201ENST00000588063 596 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC006116.10-201ENST00000591836 581 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC011816.2-201ENST00000607089 556 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC008083.4-201ENST00000615076 444 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AC026634.1-201ENST00000634369 198 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 ZNF833P-201ENST00000424938 1494 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 AL365361.1-201ENST00000566942 3481 ntBASIC3.65□□□□□ -1.83
HDDC3Q8N4P3 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms