Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC114967.1-201ENST00000504890 259 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 FTH1P21-201ENST00000512179 511 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC026801.2-201ENST00000515352 425 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 Vault.1-201ENST00000516474 102 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 Vault.3-201ENST00000516676 95 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 IGKV2D-23-201ENST00000518179 286 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 MRPS16P1-201ENST00000523462 412 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AP000857.1-201ENST00000532151 543 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AL133271.1-201ENST00000538229 291 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 CBX3P5-201ENST00000552017 521 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC006960.3-201ENST00000561845 705 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AP003465.2-201ENST00000602571 373 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 HMGB1P50-201ENST00000605814 607 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AL161734.1-201ENST00000609720 557 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AL133173.2-201ENST00000614270 90 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 uc_338.12-201ENST00000616344 181 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC233309.1-201ENST00000619522 751 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 AC073534.2-201ENST00000620377 381 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 NOL8P1-201ENST00000508336 3529 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 MAPK10-253ENST00000641010 4072 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 FAM35DP-201ENST00000323387 2712 ntBASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
CCDC28AQ8IWP9 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 RN7SKP6-201ENST00000364795 319 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 Y_RNA.296-201ENST00000364930 108 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 RNU6-517P-201ENST00000384362 110 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 JKAMPP1-201ENST00000413804 919 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 EI24P1-201ENST00000416584 867 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 RPS15AP12-201ENST00000419498 388 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 BRWD1P3-201ENST00000428816 390 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC104850.1-201ENST00000435940 476 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 OR6D1P-201ENST00000436165 939 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 USP9YP15-201ENST00000442391 422 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC005297.1-201ENST00000444765 862 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 MTCO3P20-201ENST00000454926 688 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 HMGB3P30-201ENST00000457863 606 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 S100A11P1-201ENST00000477525 312 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC010460.1-201ENST00000507087 466 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC022483.1-201ENST00000514020 567 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 MTND1P5-201ENST00000517906 940 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL049872.1-201ENST00000556323 322 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AP005432.2-201ENST00000608162 586 ntBASIC4.06□□□□□ -1.76
CCDC28AQ8IWP9 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms