Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA1P55317 MIR26A1-201ENST00000362205 77 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
FOXA1P55317 SNORA18.3-201ENST00000384122 132 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 NPM1P10-201ENST00000398310 865 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 Z92545.1-201ENST00000411782 234 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AL592148.1-201ENST00000413568 445 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC004022.2-201ENST00000413824 193 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 PRELID3BP11-201ENST00000414230 479 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 XKRYP4-201ENST00000414395 483 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 RPL31P45-201ENST00000419532 356 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AL139132.1-201ENST00000431587 344 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC112492.1-201ENST00000449607 712 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 XKRYP5-201ENST00000449659 483 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 MTND2P3-201ENST00000452458 470 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC093663.2-201ENST00000484625 313 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.67□□□□□ -1.98
FOXA1P55317 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC010374.2-201ENST00000512933 535 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA1P55317 CKS1BP1-201ENST00000555221 240 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 H3F3AP1-201ENST00000559984 334 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 CYCSP39-201ENST00000565821 309 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 AC024153.1-201ENST00000603103 365 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 LLPHP1-201ENST00000603571 367 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
FOXA1P55317 AL451074.6-201ENST00000608512 729 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 CYCSP41-201ENST00000616920 296 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 MIR8057-201ENST00000620957 69 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC092184.1-201ENST00000625042 715 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
FOXA1P55317 AL645568.2-201ENST00000432815 1337 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 DCAF13P1-201ENST00000495256 1330 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 AC109315.1-201ENST00000584143 1347 ntBASIC2.67□□□□□ -1.98
FOXA1P55317 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.66□□□□□ -1.98
FOXA1P55317 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC2.66□□□□□ -1.98
FOXA1P55317 RNU6-851P-201ENST00000384565 107 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
FOXA1P55317 AL512633.1-201ENST00000399931 655 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 TAF9BP2-201ENST00000400856 499 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 NDUFB4P4-201ENST00000404822 243 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.66□□□□□ -1.98
FOXA1P55317 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC112220.1-201ENST00000434628 355 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 RPL7P29-201ENST00000437151 728 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC097499.1-201ENST00000444277 208 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA1P55317 RPL36AP33-201ENST00000450395 310 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 TPRKBP1-201ENST00000456243 481 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 CABYRP1-201ENST00000465493 1045 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 SETP6-201ENST00000479329 568 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.66□□□□□ -1.98
FOXA1P55317 AC083906.5-201ENST00000503722 328 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC005921.1-201ENST00000510589 286 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 RNA5SP341-201ENST00000516261 117 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA1P55317 AP000889.1-201ENST00000530968 660 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.66□□□□□ -1.98
FOXA1P55317 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA1P55317 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.66□□□□□ -1.98
FOXA1P55317 MAGOH2P-202ENST00000584384 429 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 VN1R92P-201ENST00000598511 928 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AP003117.2-201ENST00000606010 545 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC002076.2-201ENST00000617362 122 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC073348.1-201ENST00000623002 331 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 AC090617.9-201ENST00000623751 147 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 ZNF90P1-201ENST00000480493 1951 ntBASIC2.66□□□□□ -1.98
FOXA1P55317 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.65□□□□□ -1.98
FOXA1P55317 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.65□□□□□ -1.98
FOXA1P55317 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.65□□□□□ -1.98
FOXA1P55317 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.65□□□□□ -1.98
FOXA1P55317 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
FOXA1P55317 METTL21EP-201ENST00000298105 713 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA1P55317 SNORA48.2-201ENST00000390926 124 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AL138885.1-201ENST00000405921 675 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 MTATP6P31-201ENST00000406985 692 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 MTND3P20-201ENST00000407663 186 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 ARL2BPP3-201ENST00000421226 480 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 HSFY1P1-201ENST00000423928 1178 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 ZFAND6P1-201ENST00000434138 605 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RSL24D1P8-201ENST00000434442 492 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RPS20P5-201ENST00000434808 360 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RPL23AP74-201ENST00000437246 471 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RPS7P5-201ENST00000441482 581 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 HSPE1P28-201ENST00000443139 211 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 AP001992.1-205ENST00000462248 379 ntBASIC2.65□□□□□ -1.99
FOXA1P55317 RPL5P24-201ENST00000463742 885 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms