Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
MSH6P52701 GABRG2-229ENST00000641017 3628 ntBASIC3.85□□□□□ -1.79
MSH6P52701 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSH6P52701 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSH6P52701 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
MSH6P52701 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSH6P52701 CYCSP45-201ENST00000402289 315 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AL590290.1-201ENST00000405336 380 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AL589655.1-201ENST00000405398 482 ntBASIC3.84□□□□□ -1.79
MSH6P52701 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
MSH6P52701 RNA5SP274-201ENST00000410484 108 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.84□□□□□ -1.79
MSH6P52701 AL591806.2-201ENST00000433122 173 ntBASIC3.84□□□□□ -1.79
MSH6P52701 MTCO1P52-201ENST00000433928 531 ntBASIC3.84□□□□□ -1.79
MSH6P52701 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
MSH6P52701 SNRPGP5-201ENST00000456003 220 ntBASIC3.84□□□□□ -1.79
MSH6P52701 RPL9P32-201ENST00000464118 620 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC021146.5-201ENST00000503544 545 ntBASIC3.84□□□□□ -1.79
MSH6P52701 TXNP6-201ENST00000510190 310 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.84□□□□□ -1.79
MSH6P52701 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.84□□□□□ -1.79
MSH6P52701 RPL7P20-201ENST00000520308 745 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.84□□□□□ -1.79
MSH6P52701 TRAV37-201ENST00000553906 342 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC012414.2-201ENST00000559474 187 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC068714.1-201ENST00000559623 800 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC084757.1-201ENST00000559987 490 ntBASIC3.84□□□□□ -1.79
MSH6P52701 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.84□□□□□ -1.79
MSH6P52701 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.84□□□□□ -1.79
MSH6P52701 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
MSH6P52701 MTCO1P9-201ENST00000505577 1534 ntBASIC3.84□□□□□ -1.8
MSH6P52701 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
MSH6P52701 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
MSH6P52701 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH6P52701 RNU6-666P-201ENST00000363499 107 ntBASIC3.83□□□□□ -1.8
MSH6P52701 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH6P52701 SNORA46-201ENST00000384762 135 ntBASIC3.83□□□□□ -1.8
MSH6P52701 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.83□□□□□ -1.8
MSH6P52701 RNA5SP425-201ENST00000410336 112 ntBASIC3.83□□□□□ -1.8
MSH6P52701 RNA5SP247-201ENST00000411181 105 ntBASIC3.83□□□□□ -1.8
MSH6P52701 RNU6-603P-201ENST00000411403 107 ntBASIC3.83□□□□□ -1.8
MSH6P52701 Z98742.3-201ENST00000418637 326 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.83□□□□□ -1.8
MSH6P52701 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.83□□□□□ -1.8
MSH6P52701 AL354710.1-201ENST00000453641 246 ntBASIC3.83□□□□□ -1.8
MSH6P52701 RPS27P29-201ENST00000463110 252 ntBASIC3.83□□□□□ -1.8
MSH6P52701 SUMO1P1-201ENST00000497904 306 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AC005351.1-201ENST00000511152 786 ntBASIC3.83□□□□□ -1.8
MSH6P52701 RNU6-1308P-201ENST00000516817 103 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.83□□□□□ -1.8
MSH6P52701 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC3.83□□□□□ -1.8
MSH6P52701 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH6P52701 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.83□□□□□ -1.8
MSH6P52701 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH6P52701 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH6P52701 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.83□□□□□ -1.8
MSH6P52701 VN1R79P-201ENST00000593540 513 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AC100814.1-201ENST00000606963 623 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.83□□□□□ -1.8
MSH6P52701 AC241585.2-209ENST00000638217 143 ntBASIC3.83□□□□□ -1.8
MSH6P52701 AL021368.2-201ENST00000606125 5352 ntBASIC3.83□□□□□ -1.8
MSH6P52701 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
MSH6P52701 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
MSH6P52701 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH6P52701 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.82□□□□□ -1.8
MSH6P52701 RNA5SP289-201ENST00000362332 137 ntBASIC3.82□□□□□ -1.8
MSH6P52701 SNORA27.3-201ENST00000364937 134 ntBASIC3.82□□□□□ -1.8
MSH6P52701 SNORA36C-201ENST00000384289 132 ntBASIC3.82□□□□□ -1.8
MSH6P52701 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
MSH6P52701 AC245054.2-201ENST00000415639 319 ntBASIC3.82□□□□□ -1.8
MSH6P52701 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AL590623.1-201ENST00000427864 105 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC023512.1-201ENST00000444513 499 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC125238.1-201ENST00000448842 249 ntBASIC3.82□□□□□ -1.8
MSH6P52701 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH6P52701 MTND3P4-201ENST00000453537 303 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH6P52701 AC010627.1-201ENST00000503819 1294 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC093770.1-201ENST00000511559 571 ntBASIC3.82□□□□□ -1.8
MSH6P52701 FAM60DP-201ENST00000524174 632 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.82□□□□□ -1.8
MSH6P52701 AC006111.3-201ENST00000622137 383 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC000123.2-201ENST00000623124 461 ntBASIC3.82□□□□□ -1.8
MSH6P52701 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
MSH6P52701 AL359715.4-201ENST00000606629 1436 ntBASIC3.82□□□□□ -1.8
MSH6P52701 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
MSH6P52701 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.81□□□□□ -1.8
MSH6P52701 AL356057.3-201ENST00000402607 340 ntBASIC3.81□□□□□ -1.8
MSH6P52701 MIR1289-2-201ENST00000408360 111 ntBASIC3.81□□□□□ -1.8
MSH6P52701 RNA5SP239-201ENST00000410218 129 ntBASIC3.81□□□□□ -1.8
MSH6P52701 HMGB3P23-201ENST00000414981 585 ntBASIC3.81□□□□□ -1.8
MSH6P52701 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH6P52701 RNU6-1218P-201ENST00000458990 108 ntBASIC3.81□□□□□ -1.8
MSH6P52701 RPL21P71-201ENST00000465598 459 ntBASIC3.81□□□□□ -1.8
MSH6P52701 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH6P52701 AC108157.1-201ENST00000510511 539 ntBASIC3.81□□□□□ -1.8
MSH6P52701 AC068657.1-201ENST00000520807 306 ntBASIC3.81□□□□□ -1.8
MSH6P52701 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
MSH6P52701 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.81□□□□□ -1.8
MSH6P52701 AC008083.2-201ENST00000546707 476 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms