Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.05□□□□□ -1.76
HADHAP40939 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.05□□□□□ -1.76
HADHAP40939 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HADHAP40939 AL354943.1-201ENST00000572103 781 ntBASIC4.05□□□□□ -1.76
HADHAP40939 RN7SL600P-201ENST00000581811 299 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AC067959.1-201ENST00000604334 379 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AC128687.1-201ENST00000605304 619 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AL591034.3-201ENST00000605511 685 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.05□□□□□ -1.76
HADHAP40939 AC090425.2-201ENST00000608818 501 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AC006023.2-201ENST00000609916 167 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AC040168.1-201ENST00000623594 991 ntBASIC4.05□□□□□ -1.76
HADHAP40939 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.05□□□□□ -1.76
HADHAP40939 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HADHAP40939 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HADHAP40939 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 UBE3AP2-201ENST00000429033 2259 ntBASIC4.04□□□□□ -1.76
HADHAP40939 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
HADHAP40939 RNU6-1249P-201ENST00000363237 111 ntBASIC4.04□□□□□ -1.76
HADHAP40939 SNORD113-6-201ENST00000363345 75 ntBASIC4.04□□□□□ -1.76
HADHAP40939 Y_RNA.126-201ENST00000363382 111 ntBASIC4.04□□□□□ -1.76
HADHAP40939 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 RNU6-1181P-201ENST00000384191 106 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RPL23AP29-201ENST00000397284 453 ntBASIC4.04□□□□□ -1.76
HADHAP40939 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 SNORA11-201ENST00000408789 128 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNA5SP317-201ENST00000410176 116 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNA5SP311-201ENST00000411290 116 ntBASIC4.04□□□□□ -1.76
HADHAP40939 TPT1P2-201ENST00000413105 503 ntBASIC4.04□□□□□ -1.76
HADHAP40939 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 MTCO3P12-201ENST00000416718 547 ntBASIC4.04□□□□□ -1.76
HADHAP40939 MTATP6P27-201ENST00000416987 621 ntBASIC4.04□□□□□ -1.76
HADHAP40939 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 AC099677.1-201ENST00000420575 175 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AL953862.1-201ENST00000423016 168 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AC019178.2-201ENST00000423595 505 ntBASIC4.04□□□□□ -1.76
HADHAP40939 OR5BE1P-201ENST00000425977 939 ntBASIC4.04□□□□□ -1.76
HADHAP40939 PSMA6P3-201ENST00000428242 164 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AL591719.1-201ENST00000444669 744 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AC239367.2-201ENST00000447309 705 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.04□□□□□ -1.76
HADHAP40939 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 RPL21P104-201ENST00000464143 478 ntBASIC4.04□□□□□ -1.76
HADHAP40939 FAM172BP-201ENST00000487497 1089 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.04□□□□□ -1.76
HADHAP40939 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 RNU6-27P-201ENST00000516146 107 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNY4P37-201ENST00000516225 96 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNA5SP315-201ENST00000516340 116 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNA5SP312-201ENST00000517068 116 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.04□□□□□ -1.76
HADHAP40939 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.04□□□□□ -1.76
HADHAP40939 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.04□□□□□ -1.76
HADHAP40939 VN1R78P-201ENST00000597393 564 ntBASIC4.04□□□□□ -1.76
HADHAP40939 HMGB1P50-201ENST00000605814 607 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 RNU4-89P-201ENST00000607443 133 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AL357080.1-201ENST00000617394 239 ntBASIC4.04□□□□□ -1.76
HADHAP40939 AC112484.5-201ENST00000624189 228 ntBASIC4.04□□□□□ -1.76
HADHAP40939 RNA5SP196-201ENST00000625967 102 ntBASIC4.04□□□□□ -1.76
HADHAP40939 OR5BE1P-202ENST00000641168 1176 ntBASIC4.04□□□□□ -1.76
HADHAP40939 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 MTND5P24-201ENST00000438892 1767 ntBASIC4.04□□□□□ -1.76
HADHAP40939 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.04□□□□□ -1.76
HADHAP40939 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HADHAP40939 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.03□□□□□ -1.76
HADHAP40939 AC004925.1-201ENST00000624256 2706 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AF127577.6-201ENST00000623352 2191 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AL049780.3-201ENST00000624612 1583 ntBASIC4.03□□□□□ -1.76
HADHAP40939 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.03□□□□□ -1.76
HADHAP40939 RNU1-64P-201ENST00000365443 163 ntBASIC4.03□□□□□ -1.76
HADHAP40939 RNU1-13P-201ENST00000384499 162 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AL138880.1-201ENST00000405824 642 ntBASIC4.03□□□□□ -1.76
HADHAP40939 USP9YP33-201ENST00000412220 421 ntBASIC4.03□□□□□ -1.76
HADHAP40939 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.03□□□□□ -1.76
HADHAP40939 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
HADHAP40939 HIGD1AP4-201ENST00000430194 280 ntBASIC4.03□□□□□ -1.76
HADHAP40939 USP9YP35-201ENST00000435696 412 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AF228730.2-201ENST00000438784 848 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC4.03□□□□□ -1.76
HADHAP40939 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.03□□□□□ -1.76
HADHAP40939 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.03□□□□□ -1.76
HADHAP40939 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.03□□□□□ -1.76
HADHAP40939 HMGB1P25-201ENST00000468402 607 ntBASIC4.03□□□□□ -1.76
HADHAP40939 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HADHAP40939 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.03□□□□□ -1.76
HADHAP40939 AC021146.8-201ENST00000507455 733 ntBASIC4.03□□□□□ -1.76
HADHAP40939 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.03□□□□□ -1.76
HADHAP40939 AC093853.1-201ENST00000515689 483 ntBASIC4.03□□□□□ -1.76
HADHAP40939 MRPS36P3-201ENST00000519284 130 ntBASIC4.03□□□□□ -1.76
HADHAP40939 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms