Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.95□□□□□ -1.78
CUX1P39880 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.95□□□□□ -1.78
CUX1P39880 Z98742.2-201ENST00000431564 187 ntBASIC3.95□□□□□ -1.78
CUX1P39880 AC012119.1-201ENST00000603184 222 ntBASIC3.95□□□□□ -1.78
CUX1P39880 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CUX1P39880 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
CUX1P39880 AC080128.1-201ENST00000474389 1917 ntBASIC3.95□□□□□ -1.78
CUX1P39880 RNU6-253P-201ENST00000384730 105 ntBASIC3.95□□□□□ -1.78
CUX1P39880 AL606490.7-201ENST00000433136 191 ntBASIC3.95□□□□□ -1.78
CUX1P39880 BTG3P1-201ENST00000435859 716 ntBASIC3.95□□□□□ -1.78
CUX1P39880 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.95□□□□□ -1.78
CUX1P39880 AC106872.3-201ENST00000495104 446 ntBASIC3.95□□□□□ -1.78
CUX1P39880 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.95□□□□□ -1.78
CUX1P39880 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.95□□□□□ -1.78
CUX1P39880 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CUX1P39880 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.95□□□□□ -1.78
CUX1P39880 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC3.95□□□□□ -1.78
CUX1P39880 AL512643.1-201ENST00000635735 524 ntBASIC3.95□□□□□ -1.78
CUX1P39880 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
CUX1P39880 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.94□□□□□ -1.78
CUX1P39880 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.94□□□□□ -1.78
CUX1P39880 MTCO2P17-201ENST00000424336 677 ntBASIC3.94□□□□□ -1.78
CUX1P39880 AC010881.1-201ENST00000433830 235 ntBASIC3.94□□□□□ -1.78
CUX1P39880 AC013410.1-201ENST00000436223 1232 ntBASIC3.94□□□□□ -1.78
CUX1P39880 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.94□□□□□ -1.78
CUX1P39880 AC108860.1-201ENST00000484521 383 ntBASIC3.94□□□□□ -1.78
CUX1P39880 GOLGA5P1-201ENST00000507317 980 ntBASIC3.94□□□□□ -1.78
CUX1P39880 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.94□□□□□ -1.78
CUX1P39880 NRBF2P1-201ENST00000587407 859 ntBASIC3.94□□□□□ -1.78
CUX1P39880 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.94□□□□□ -1.78
CUX1P39880 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CUX1P39880 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.93□□□□□ -1.78
CUX1P39880 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.93□□□□□ -1.78
CUX1P39880 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CUX1P39880 GSTA9P-201ENST00000406231 611 ntBASIC3.93□□□□□ -1.78
CUX1P39880 VTA1P1-201ENST00000414044 866 ntBASIC3.93□□□□□ -1.78
CUX1P39880 TRBV1-201ENST00000476502 284 ntBASIC3.93□□□□□ -1.78
CUX1P39880 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.93□□□□□ -1.78
CUX1P39880 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.93□□□□□ -1.78
CUX1P39880 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.93□□□□□ -1.78
CUX1P39880 AC090229.1-201ENST00000590983 1609 ntBASIC3.92□□□□□ -1.78
CUX1P39880 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.92□□□□□ -1.78
CUX1P39880 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CUX1P39880 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
CUX1P39880 AL023284.1-201ENST00000403956 276 ntBASIC3.92□□□□□ -1.78
CUX1P39880 RNA5SP129-201ENST00000410276 118 ntBASIC3.92□□□□□ -1.78
CUX1P39880 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.92□□□□□ -1.78
CUX1P39880 HMGB1P15-201ENST00000453854 435 ntBASIC3.92□□□□□ -1.78
CUX1P39880 MTCO3P11-201ENST00000455103 774 ntBASIC3.92□□□□□ -1.78
CUX1P39880 RPL23AP11-201ENST00000475260 469 ntBASIC3.92□□□□□ -1.78
CUX1P39880 CKS1BP2-201ENST00000497342 240 ntBASIC3.92□□□□□ -1.78
CUX1P39880 AL450489.1-201ENST00000612071 468 ntBASIC3.92□□□□□ -1.78
CUX1P39880 AC004825.2-201ENST00000616634 455 ntBASIC3.92□□□□□ -1.78
CUX1P39880 DCAF13P3-201ENST00000561147 1334 ntBASIC3.92□□□□□ -1.78
CUX1P39880 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.91□□□□□ -1.78
CUX1P39880 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CUX1P39880 MIR3074-201ENST00000384885 81 ntBASIC3.91□□□□□ -1.78
CUX1P39880 RNU2-6P-201ENST00000411404 190 ntBASIC3.91□□□□□ -1.78
CUX1P39880 AC244505.4-201ENST00000434905 287 ntBASIC3.91□□□□□ -1.78
CUX1P39880 SSXP5-201ENST00000443473 287 ntBASIC3.91□□□□□ -1.78
CUX1P39880 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.91□□□□□ -1.78
CUX1P39880 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.91□□□□□ -1.78
CUX1P39880 AC018630.1-201ENST00000541376 925 ntBASIC3.91□□□□□ -1.78
CUX1P39880 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.91□□□□□ -1.78
CUX1P39880 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.91□□□□□ -1.78
CUX1P39880 AP006248.2-201ENST00000623309 592 ntBASIC3.91□□□□□ -1.78
CUX1P39880 AC110994.2-201ENST00000635481 492 ntBASIC3.91□□□□□ -1.78
CUX1P39880 CUL1P1-201ENST00000509510 2425 ntBASIC3.91□□□□□ -1.78
CUX1P39880 AC009487.4-201ENST00000624969 3585 ntBASIC3.91□□□□□ -1.78
CUX1P39880 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
CUX1P39880 FAT1P1-201ENST00000406588 507 ntBASIC3.9□□□□□ -1.78
CUX1P39880 COX6CP2-201ENST00000444980 225 ntBASIC3.9□□□□□ -1.78
CUX1P39880 RPL21P18-201ENST00000469899 480 ntBASIC3.9□□□□□ -1.78
CUX1P39880 RNA5SP76-201ENST00000516277 87 ntBASIC3.9□□□□□ -1.78
CUX1P39880 AADACP1-206ENST00000561502 1193 ntBASIC3.9□□□□□ -1.78
CUX1P39880 Z99496.1-201ENST00000469424 1477 ntBASIC3.9□□□□□ -1.78
CUX1P39880 Y_RNA.40-201ENST00000362645 93 ntBASIC3.9□□□□□ -1.79
CUX1P39880 MIR137-201ENST00000385223 102 ntBASIC3.9□□□□□ -1.79
CUX1P39880 AC107081.1-201ENST00000414975 361 ntBASIC3.9□□□□□ -1.79
CUX1P39880 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC3.9□□□□□ -1.79
CUX1P39880 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC3.9□□□□□ -1.79
CUX1P39880 SNRPGP18-201ENST00000553000 214 ntBASIC3.9□□□□□ -1.79
CUX1P39880 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.9□□□□□ -1.79
CUX1P39880 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CUX1P39880 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CUX1P39880 AC010733.2-201ENST00000589496 5702 ntBASIC3.89□□□□□ -1.79
CUX1P39880 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CUX1P39880 AC117529.2-201ENST00000512159 2068 ntBASIC3.89□□□□□ -1.79
CUX1P39880 Y_RNA.118-201ENST00000363300 101 ntBASIC3.89□□□□□ -1.79
CUX1P39880 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CUX1P39880 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC3.89□□□□□ -1.79
CUX1P39880 AL513175.2-201ENST00000422071 443 ntBASIC3.89□□□□□ -1.79
CUX1P39880 RPL36AP33-201ENST00000450395 310 ntBASIC3.89□□□□□ -1.79
CUX1P39880 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.89□□□□□ -1.79
CUX1P39880 RPL21P71-201ENST00000465598 459 ntBASIC3.89□□□□□ -1.79
CUX1P39880 AC104090.1-201ENST00000506341 1171 ntBASIC3.89□□□□□ -1.79
CUX1P39880 MAL2-205ENST00000521048 575 ntTSL 4 BASIC3.89□□□□□ -1.79
CUX1P39880 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.89□□□□□ -1.79
CUX1P39880 AC074029.1-201ENST00000552531 1044 ntBASIC3.89□□□□□ -1.79
CUX1P39880 AL109741.3-201ENST00000561748 592 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms