Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.34□□□□□ -1.87
BRCA1P38398 AC092881.1-201ENST00000638218 2733 ntBASIC3.34□□□□□ -1.88
BRCA1P38398 ELL2P4-201ENST00000446870 1376 ntBASIC3.34□□□□□ -1.88
BRCA1P38398 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
BRCA1P38398 AC083799.1-201ENST00000366451 910 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AL137014.1-201ENST00000420490 1226 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 FO393419.3-201ENST00000428741 282 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AL591806.2-201ENST00000433122 173 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AL590103.1-201ENST00000434488 307 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 MTND2P21-201ENST00000436242 1042 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 ELOCP11-201ENST00000436690 332 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 ELOCP16-201ENST00000444494 332 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 RNU6-775P-201ENST00000459318 96 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 FABP5P12-201ENST00000515543 389 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 AC019227.1-201ENST00000526902 510 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC3.33□□□□□ -1.88
BRCA1P38398 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.33□□□□□ -1.88
BRCA1P38398 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.33□□□□□ -1.88
BRCA1P38398 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.33□□□□□ -1.88
BRCA1P38398 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
BRCA1P38398 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.33□□□□□ -1.88
BRCA1P38398 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
BRCA1P38398 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
BRCA1P38398 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
BRCA1P38398 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 B3GNT2P1-201ENST00000434960 952 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC092685.1-201ENST00000447960 1243 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 AC005912.1-201ENST00000495392 255 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC108210.2-201ENST00000503681 201 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.33□□□□□ -1.88
BRCA1P38398 RFPL1S-203ENST00000539579 330 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.33□□□□□ -1.88
BRCA1P38398 NF1P5-201ENST00000588287 448 ntBASIC3.33□□□□□ -1.88
BRCA1P38398 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.33□□□□□ -1.88
BRCA1P38398 MTND4P31-201ENST00000425607 1343 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 AC025125.1-201ENST00000624743 1922 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
BRCA1P38398 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
BRCA1P38398 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
BRCA1P38398 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.32□□□□□ -1.88
BRCA1P38398 AC004972.1-201ENST00000623934 2209 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
BRCA1P38398 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.32□□□□□ -1.88
BRCA1P38398 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.32□□□□□ -1.88
BRCA1P38398 AC011155.1-201ENST00000316512 456 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 AL589655.1-201ENST00000405398 482 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.32□□□□□ -1.88
BRCA1P38398 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.32□□□□□ -1.88
BRCA1P38398 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.32□□□□□ -1.88
BRCA1P38398 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.32□□□□□ -1.88
BRCA1P38398 AC022784.5-201ENST00000522241 437 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 OR5AK3P-201ENST00000527486 1297 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 AC007621.1-201ENST00000604544 437 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.32□□□□□ -1.88
BRCA1P38398 uc_338.9-201ENST00000617424 182 ntBASIC3.32□□□□□ -1.88
BRCA1P38398 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
BRCA1P38398 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
BRCA1P38398 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
BRCA1P38398 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
BRCA1P38398 RNU1-35P-201ENST00000362782 153 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 RNU6-356P-201ENST00000384140 107 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 MIR142-201ENST00000384835 87 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 MIR3074-201ENST00000384885 81 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 RPL31P45-201ENST00000419532 356 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 AL353093.1-201ENST00000441292 436 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 ST13P14-201ENST00000474095 734 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.31□□□□□ -1.88
BRCA1P38398 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.31□□□□□ -1.88
BRCA1P38398 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.31□□□□□ -1.88
BRCA1P38398 OR6C73P-201ENST00000546432 358 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.31□□□□□ -1.88
BRCA1P38398 AC009501.3-201ENST00000605001 1352 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 AC008264.2-201ENST00000610193 3731 ntBASIC3.31□□□□□ -1.88
BRCA1P38398 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
BRCA1P38398 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
BRCA1P38398 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
BRCA1P38398 SNORA36C-201ENST00000384289 132 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.3□□□□□ -1.88
BRCA1P38398 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.3□□□□□ -1.88
BRCA1P38398 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 AC078785.3-201ENST00000476607 425 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
BRCA1P38398 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.3□□□□□ -1.88
BRCA1P38398 AC023158.1-201ENST00000561632 1025 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.3□□□□□ -1.88
BRCA1P38398 AL355493.4-201ENST00000618530 292 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AP003072.4-201ENST00000624580 310 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
BRCA1P38398 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
BRCA1P38398 AC015813.6-201ENST00000624409 5808 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 RNU6-244P-201ENST00000391028 104 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 HMGB1P13-201ENST00000406019 642 ntBASIC3.3□□□□□ -1.88
BRCA1P38398 AL135786.1-201ENST00000415892 214 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms