Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RPL7P52-201ENST00000449200 742 ntBASIC2.9□□□□□ -1.95
USF1P22415 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
USF1P22415 NPM1P13-201ENST00000452663 865 ntBASIC2.9□□□□□ -1.95
USF1P22415 RPS24P6-201ENST00000452670 400 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC006539.3-201ENST00000454258 129 ntBASIC2.9□□□□□ -1.95
USF1P22415 PTGES3P5-201ENST00000455109 434 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.9□□□□□ -1.95
USF1P22415 MTCO3P35-201ENST00000485582 781 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC093663.1-201ENST00000497190 394 ntBASIC2.9□□□□□ -1.95
USF1P22415 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 MTCO3P44-201ENST00000510977 541 ntBASIC2.9□□□□□ -1.95
USF1P22415 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC2.9□□□□□ -1.95
USF1P22415 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.9□□□□□ -1.95
USF1P22415 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.9□□□□□ -1.95
USF1P22415 NDUFB9P3-201ENST00000521269 501 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC011611.5-201ENST00000552477 578 ntBASIC2.9□□□□□ -1.95
USF1P22415 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC2.9□□□□□ -1.95
USF1P22415 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC2.9□□□□□ -1.95
USF1P22415 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AC010735.1-201ENST00000567305 1026 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AL355812.1-201ENST00000603215 216 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC103881.1-201ENST00000603476 538 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC016877.3-201ENST00000606778 504 ntBASIC2.9□□□□□ -1.95
USF1P22415 AL354976.1-201ENST00000613843 387 ntBASIC2.9□□□□□ -1.95
USF1P22415 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AC006963.1-201ENST00000624003 1052 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC106730.3-201ENST00000624568 641 ntBASIC2.9□□□□□ -1.95
USF1P22415 SCARNA15.3-201ENST00000626315 122 ntBASIC2.9□□□□□ -1.95
USF1P22415 SCARNA4.1-201ENST00000628597 123 ntBASIC2.9□□□□□ -1.95
USF1P22415 AC091948.2-201ENST00000636510 279 ntBASIC2.9□□□□□ -1.95
USF1P22415 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AC024341.1-201ENST00000526444 1552 ntBASIC2.9□□□□□ -1.95
USF1P22415 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
USF1P22415 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC2.9□□□□□ -1.95
USF1P22415 AL079305.1-201ENST00000623159 3008 ntBASIC2.9□□□□□ -1.95
USF1P22415 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
USF1P22415 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 RNU6-339P-201ENST00000384310 107 ntBASIC2.89□□□□□ -1.95
USF1P22415 MIR649-201ENST00000384843 97 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL136116.1-201ENST00000403591 381 ntBASIC2.89□□□□□ -1.95
USF1P22415 RN7SKP111-201ENST00000410349 271 ntBASIC2.89□□□□□ -1.95
USF1P22415 RN7SKP53-201ENST00000411337 315 ntBASIC2.89□□□□□ -1.95
USF1P22415 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AL024507.1-201ENST00000412741 274 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AC009237.2-201ENST00000421358 284 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL158071.1-201ENST00000430315 461 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC115115.1-201ENST00000449927 248 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL096803.2-201ENST00000450032 677 ntBASIC2.89□□□□□ -1.95
USF1P22415 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 AL136126.1-201ENST00000473603 402 ntBASIC2.89□□□□□ -1.95
USF1P22415 RPS4XP22-201ENST00000480755 780 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC092185.1-201ENST00000491371 97 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL024509.2-201ENST00000493462 493 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC098799.1-201ENST00000504752 800 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 MTND4LP22-201ENST00000508209 276 ntBASIC2.89□□□□□ -1.95
USF1P22415 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 MTCO2P32-201ENST00000514865 403 ntBASIC2.89□□□□□ -1.95
USF1P22415 IGKV2-26-201ENST00000518305 343 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.89□□□□□ -1.95
USF1P22415 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC2.89□□□□□ -1.95
USF1P22415 IGLVIV-66-1-201ENST00000521832 460 ntBASIC2.89□□□□□ -1.95
USF1P22415 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 OR8K2P-201ENST00000524645 927 ntBASIC2.89□□□□□ -1.95
USF1P22415 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AL845331.3-202ENST00000562856 261 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 AC005951.1-201ENST00000576706 485 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC012493.2-201ENST00000595083 291 ntBASIC2.89□□□□□ -1.95
USF1P22415 BNIP3P38-201ENST00000601117 544 ntBASIC2.89□□□□□ -1.95
USF1P22415 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.89□□□□□ -1.95
USF1P22415 Z83843.1-201ENST00000604070 3685 ntBASIC2.89□□□□□ -1.95
USF1P22415 DPRXP5-201ENST00000604662 539 ntBASIC2.89□□□□□ -1.95
USF1P22415 MIR7112-201ENST00000616126 65 ntBASIC2.89□□□□□ -1.95
USF1P22415 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 AC010733.2-201ENST00000589496 5702 ntBASIC2.89□□□□□ -1.95
USF1P22415 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC2.89□□□□□ -1.95
USF1P22415 SRP72P2-201ENST00000344851 1979 ntBASIC2.89□□□□□ -1.95
USF1P22415 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.89□□□□□ -1.95
USF1P22415 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
USF1P22415 AC007496.3-201ENST00000624987 3443 ntBASIC2.89□□□□□ -1.95
USF1P22415 AL645937.1-201ENST00000641739 1652 ntBASIC2.88□□□□□ -1.95
USF1P22415 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.88□□□□□ -1.95
USF1P22415 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
USF1P22415 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms