Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC9.89□□□□□ -0.83
MSH5O43196 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
MSH5O43196 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC9.89□□□□□ -0.83
MSH5O43196 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
MSH5O43196 SMG1P1-202ENST00000309865 4223 ntBASIC9.88□□□□□ -0.83
MSH5O43196 LDAH-209ENST00000440866 3728 ntTSL 2 BASIC9.88□□□□□ -0.83
MSH5O43196 AP000766.1-201ENST00000561746 4140 ntBASIC9.88□□□□□ -0.83
MSH5O43196 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
MSH5O43196 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 SNORA73B-201ENST00000363217 204 ntBASIC9.88□□□□□ -0.83
MSH5O43196 RPL21P17-201ENST00000397467 475 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC9.88□□□□□ -0.83
MSH5O43196 CSE1L-AS1-201ENST00000417781 556 ntTSL 2 BASIC9.88□□□□□ -0.83
MSH5O43196 AC138623.1-201ENST00000418060 216 ntBASIC9.88□□□□□ -0.83
MSH5O43196 RPL17P36-201ENST00000420302 549 ntBASIC9.88□□□□□ -0.83
MSH5O43196 TDGF1P1-201ENST00000445734 527 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC9.88□□□□□ -0.83
MSH5O43196 MRPS21P1-201ENST00000453850 223 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AC026336.1-201ENST00000466577 351 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AC100823.2-201ENST00000518337 699 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC9.88□□□□□ -0.83
MSH5O43196 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC9.88□□□□□ -0.83
MSH5O43196 VN1R84P-201ENST00000593697 235 ntBASIC9.88□□□□□ -0.83
MSH5O43196 CYP4F35P-202ENST00000636121 390 ntBASIC9.88□□□□□ -0.83
MSH5O43196 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC9.88□□□□□ -0.83
MSH5O43196 AC020904.2-202ENST00000614660 1401 ntBASIC9.88□□□□□ -0.83
MSH5O43196 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC9.88□□□□□ -0.83
MSH5O43196 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
MSH5O43196 AC005839.1-201ENST00000624148 3213 ntBASIC9.88□□□□□ -0.83
MSH5O43196 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
MSH5O43196 THAP12P5-201ENST00000405864 2275 ntBASIC9.87□□□□□ -0.83
MSH5O43196 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 USP45-204ENST00000369233 2514 ntTSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 AC112243.1-201ENST00000623949 3851 ntBASIC9.87□□□□□ -0.83
MSH5O43196 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC9.87□□□□□ -0.83
MSH5O43196 AC062029.1-202ENST00000606164 3651 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC9.87□□□□□ -0.83
MSH5O43196 SNORA72.4-201ENST00000384174 132 ntBASIC9.87□□□□□ -0.83
MSH5O43196 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC9.87□□□□□ -0.83
MSH5O43196 Y_RNA.622-201ENST00000411091 108 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC9.87□□□□□ -0.83
MSH5O43196 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC9.87□□□□□ -0.83
MSH5O43196 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 AC010733.1-201ENST00000451515 401 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC9.87□□□□□ -0.83
MSH5O43196 AC087385.2-201ENST00000477729 498 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AC016256.1-201ENST00000547971 354 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC9.87□□□□□ -0.83
MSH5O43196 CDC42EP3P1-201ENST00000601004 764 ntBASIC9.87□□□□□ -0.83
MSH5O43196 AC123786.2-201ENST00000603459 275 ntBASIC9.87□□□□□ -0.83
MSH5O43196 RNVU1-19-201ENST00000613023 167 ntBASIC9.87□□□□□ -0.83
MSH5O43196 EIF4ENIF1-205ENST00000397523 3420 ntTSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC9.87□□□□□ -0.83
MSH5O43196 AC009541.1-201ENST00000438279 2662 ntBASIC9.87□□□□□ -0.83
MSH5O43196 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
MSH5O43196 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
MSH5O43196 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
MSH5O43196 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
MSH5O43196 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
MSH5O43196 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
MSH5O43196 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
MSH5O43196 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
MSH5O43196 RNU6-384P-201ENST00000364900 104 ntBASIC9.86□□□□□ -0.83
MSH5O43196 RNU6-675P-201ENST00000384236 104 ntBASIC9.86□□□□□ -0.83
MSH5O43196 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
MSH5O43196 RNA5SP185-201ENST00000390963 114 ntBASIC9.86□□□□□ -0.83
MSH5O43196 RNU6-159P-201ENST00000391080 106 ntBASIC9.86□□□□□ -0.83
MSH5O43196 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
MSH5O43196 GGA1-205ENST00000405147 575 ntTSL 4 BASIC9.86□□□□□ -0.83
MSH5O43196 OR10G8-201ENST00000431524 1045 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
MSH5O43196 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC9.86□□□□□ -0.83
MSH5O43196 AC234782.3-201ENST00000461229 433 ntBASIC9.86□□□□□ -0.83
MSH5O43196 RN7SL836P-201ENST00000476140 296 ntBASIC9.86□□□□□ -0.83
MSH5O43196 AF186996.7-201ENST00000492781 209 ntBASIC9.86□□□□□ -0.83
MSH5O43196 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC9.86□□□□□ -0.83
MSH5O43196 AC027801.3-201ENST00000515049 698 ntBASIC9.86□□□□□ -0.83
MSH5O43196 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC9.86□□□□□ -0.83
MSH5O43196 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC9.86□□□□□ -0.83
MSH5O43196 MMP25-AS1-206ENST00000573130 4434 ntTSL 2 BASIC9.86□□□□□ -0.83
MSH5O43196 AL022345.2-201ENST00000606307 135 ntBASIC9.86□□□□□ -0.83
MSH5O43196 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC9.86□□□□□ -0.83
MSH5O43196 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
MSH5O43196 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 214.8 ms