Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AL031666.3-201ENST00000609320 1006 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 MIR6748-201ENST00000610433 71 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AC027807.2-201ENST00000616099 408 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.59□□□□□ -1.67
FOXN3O00409 AP000346.3-201ENST00000622821 210 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AL445363.3-201ENST00000623080 671 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.59□□□□□ -1.67
FOXN3O00409 AC091925.2-201ENST00000625059 256 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AC025048.6-202ENST00000627667 438 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AC084035.1-201ENST00000634543 607 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AC090582.1-201ENST00000636321 199 ntBASIC4.59□□□□□ -1.67
FOXN3O00409 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.59□□□□□ -1.67
FOXN3O00409 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
FOXN3O00409 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.59□□□□□ -1.68
FOXN3O00409 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXN3O00409 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
FOXN3O00409 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 RNU6-623P-201ENST00000363143 105 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 RNA5SP447-201ENST00000363749 119 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 RNU6-809P-201ENST00000384461 107 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 U3.29-201ENST00000391296 212 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 Y_RNA.599-201ENST00000410489 109 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 Y_RNA.619-201ENST00000410951 90 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 MTCYBP24-201ENST00000420387 1106 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AL391219.1-201ENST00000422570 483 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AL732292.1-201ENST00000426692 226 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AL512649.1-201ENST00000428997 581 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AL512326.1-201ENST00000443050 721 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 RPL23AP81-201ENST00000455252 467 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AP001992.1-205ENST00000462248 379 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 RN7SL810P-201ENST00000493031 276 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC021678.1-201ENST00000505195 936 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 CBX3P5-201ENST00000552017 521 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC024909.2-201ENST00000553035 286 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.58□□□□□ -1.68
FOXN3O00409 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC006362.1-201ENST00000567392 174 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC012414.6-201ENST00000568241 401 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 AL669831.4-202ENST00000590817 238 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 MIR432-201ENST00000606207 94 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 MIR6798-201ENST00000612887 67 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 uc_338.32-201ENST00000615087 172 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 AC018755.4-201ENST00000619715 454 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC4.58□□□□□ -1.68
FOXN3O00409 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC093591.3-201ENST00000634516 308 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
FOXN3O00409 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC139713.2-214ENST00000642059 1811 ntBASIC4.58□□□□□ -1.68
FOXN3O00409 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.58□□□□□ -1.68
FOXN3O00409 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXN3O00409 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXN3O00409 AL390237.1-201ENST00000404226 1415 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
FOXN3O00409 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXN3O00409 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
FOXN3O00409 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXN3O00409 RNA5SP52-201ENST00000362448 134 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 RNA5SP443-201ENST00000363083 132 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXN3O00409 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXN3O00409 RNU6-648P-201ENST00000410190 107 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 Y_RNA.625-201ENST00000411256 107 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXN3O00409 PGBD4P8-201ENST00000412993 562 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXN3O00409 EIF4EP1-201ENST00000422311 642 ntBASIC4.57□□□□□ -1.68
FOXN3O00409 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
FOXN3O00409 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.57□□□□□ -1.68
FOXN3O00409 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms