Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AP003122.3-201ENST00000526316 255 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC068587.4-201ENST00000533893 186 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC005868.1-201ENST00000536421 331 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC008083.2-201ENST00000546707 476 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 TRAV15-201ENST00000556680 249 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CYCSP2-201ENST00000558168 301 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 NDUFB4P11-201ENST00000560510 395 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 FRG2DP-202ENST00000566967 323 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CYCSP40-201ENST00000575927 294 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 CKS1BP3-201ENST00000600888 237 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AL627309.6-201ENST00000606857 840 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MIR6768-201ENST00000610734 72 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC093913.1-201ENST00000614178 329 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC090617.10-201ENST00000624308 134 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MTND4P35-201ENST00000604257 1375 ntBASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC39Q9UFE4 AC006378.2-201ENST00000623178 2476 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 PANDAR-201ENST00000629595 1506 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.188-201ENST00000363952 111 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.231-201ENST00000364358 102 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 RNU6-619P-201ENST00000365146 108 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.395-201ENST00000383945 109 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC068050.1-201ENST00000394891 380 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 DUTP5-201ENST00000406790 469 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 MIR1302-3-201ENST00000408128 138 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SNORA11.3-201ENST00000408471 128 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SNORA11C-201ENST00000408532 129 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC073335.1-201ENST00000427776 363 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 NANOGP6-201ENST00000429190 847 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 LYPLA1P1-201ENST00000434514 622 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC016724.1-201ENST00000453215 421 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 RN7SL441P-201ENST00000492388 296 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC021146.3-201ENST00000511911 260 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 RNA5SP401-201ENST00000515920 127 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SULT1C2P2-201ENST00000562517 294 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC007225.2-201ENST00000562529 256 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC021646.1-201ENST00000605469 484 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 MIR98-201ENST00000606724 119 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC097468.3-201ENST00000607956 456 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AL161734.1-201ENST00000609720 557 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 RPSAP73-201ENST00000614820 330 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 uc_338.18-201ENST00000615451 175 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SNORA11.6-201ENST00000619030 128 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 AC233309.1-201ENST00000619522 751 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 MTCO1P14-201ENST00000441695 1559 ntBASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC39Q9UFE4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL672167.1-205ENST00000641112 3080 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 Y_RNA.31-201ENST00000362574 102 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 U3.2-201ENST00000362981 210 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 CISD1P1-201ENST00000393907 327 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 RPS4XP8-201ENST00000402039 771 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL391361.1-201ENST00000405580 489 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 RNU2-3P-201ENST00000410144 191 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 RN7SKP126-201ENST00000411143 300 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 CKS1BP6-201ENST00000424932 240 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 AL606489.2-201ENST00000433886 234 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 FTH1P16-201ENST00000435241 552 ntBASIC5.74□□□□□ -1.49
CCDC39Q9UFE4 CBX1P1-201ENST00000440184 427 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms