Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL359999.1-201ENST00000604513 294 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 AF250324.2-201ENST00000608299 610 ntBASIC4.7□□□□□ -1.66
TDP1Q9NUW8 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TDP1Q9NUW8 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC009951.1-201ENST00000623674 2614 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AL672167.1-204ENST00000641875 3017 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 Y_RNA.46-201ENST00000362695 102 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 RNU6-730P-201ENST00000383954 104 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AL080315.1-201ENST00000406055 466 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 MTND1P21-201ENST00000412991 285 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC004987.3-201ENST00000413879 771 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 SPA17P1-201ENST00000416656 452 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 RPEP2-201ENST00000432149 701 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 MTCYBP45-201ENST00000435243 565 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC009961.2-201ENST00000435771 251 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC127537.2-201ENST00000439258 465 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 SDCBPP1-201ENST00000440192 890 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 NUTF2P7-201ENST00000453086 375 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC009963.2-201ENST00000453431 138 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 HMGB1P15-201ENST00000453854 435 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 RN7SL98P-201ENST00000462271 300 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 HMGB1P21-201ENST00000502313 581 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 TXNP6-201ENST00000510190 310 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 SNORD116-26-201ENST00000516006 96 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 RN7SKP21-201ENST00000516503 220 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 RNU6-714P-201ENST00000516963 103 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC024224.1-201ENST00000538284 609 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AL157394.1-201ENST00000562983 1224 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 OR4G1P-201ENST00000588632 938 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 VN1R79P-201ENST00000593540 513 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC024941.1-201ENST00000612250 334 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 U4.5-201ENST00000617137 123 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC072046.2-201ENST00000618366 268 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC092447.10-201ENST00000620607 1652 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC090971.4-201ENST00000560291 1800 ntBASIC4.69□□□□□ -1.66
TDP1Q9NUW8 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.69□□□□□ -1.66
TDP1Q9NUW8 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 FARSBP1-201ENST00000435808 1778 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 RNY4P34-201ENST00000364779 95 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 RPL7P25-201ENST00000404151 721 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AL358176.3-201ENST00000420757 454 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 ISCA1P1-201ENST00000426679 387 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 MRPS10P2-201ENST00000431226 381 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 MTND3P21-201ENST00000433774 331 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 RABEPKP1-201ENST00000440529 1026 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 PHBP16-201ENST00000446318 950 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 RPL23AP43-201ENST00000446445 471 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC053481.1-201ENST00000467217 306 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 RPS3AP17-201ENST00000472594 777 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC012170.1-201ENST00000495139 359 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC006390.1-201ENST00000508068 283 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC093677.1-201ENST00000514414 678 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC093853.1-201ENST00000515689 483 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC022790.1-201ENST00000522872 204 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.68□□□□□ -1.66
TDP1Q9NUW8 ZNF519P2-201ENST00000557032 169 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC006960.3-201ENST00000561845 705 ntBASIC4.68□□□□□ -1.66
TDP1Q9NUW8 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 156.8 ms