Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 ISCA1P3-201ENST00000577104 373 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 BNIP3P24-201ENST00000593398 557 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC020910.2-201ENST00000603635 610 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL009028.1-201ENST00000604895 802 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC024560.3-201ENST00000608482 349 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 MIR7151-201ENST00000617477 60 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC079228.1-201ENST00000624774 1049 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC010608.2-201ENST00000624830 470 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 MIR3653-201ENST00000625572 110 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 MIR4496-201ENST00000635896 61 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 AC095050.2-201ENST00000510748 1458 ntBASIC3.46□□□□□ -1.86
NKX3-1Q99801 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.46□□□□□ -1.86
NKX3-1Q99801 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
NKX3-1Q99801 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NKX3-1Q99801 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NKX3-1Q99801 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 RNA5SP366-201ENST00000365454 123 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 SNORD82-201ENST00000365530 70 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 RNU1-89P-201ENST00000384592 164 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 RPL31P1-201ENST00000398116 372 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL356967.1-201ENST00000406305 431 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 MIR1193-201ENST00000408109 78 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 RN7SKP177-201ENST00000410567 355 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 RNU6-628P-201ENST00000410675 107 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NKX3-1Q99801 RPL7P30-201ENST00000420888 709 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL953862.1-201ENST00000423016 168 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC005517.2-201ENST00000424673 553 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 RPS27AP12-201ENST00000429552 465 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL356535.1-201ENST00000440335 398 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC005297.2-201ENST00000450430 606 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC026410.2-201ENST00000460281 156 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC097493.1-201ENST00000463958 372 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC104685.1-201ENST00000502445 371 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC118465.1-201ENST00000513820 1271 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 RNU6-232P-201ENST00000517144 64 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 IGKV2D-23-201ENST00000518179 286 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 IGHV3-32-201ENST00000519182 355 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC022968.1-201ENST00000567372 442 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC109446.2-201ENST00000567872 497 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC011260.1-201ENST00000578420 472 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC090616.2-202ENST00000584248 222 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 BNIP3P11-201ENST00000603878 563 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC072039.2-201ENST00000608883 439 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 ZYXP1-201ENST00000617638 118 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AL445567.2-201ENST00000618935 498 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC048344.4-201ENST00000619744 527 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC079248.2-201ENST00000623779 326 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 AC068724.3-201ENST00000625906 87 ntBASIC3.45□□□□□ -1.86
NKX3-1Q99801 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
NKX3-1Q99801 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
NKX3-1Q99801 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.45□□□□□ -1.86
NKX3-1Q99801 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms